Skip to main content

Transcriptome of pleuropodia from locust embryos supports that these organs produce enzymes enabling the larva to hatch

Abstract

Background

Pleuropodia are limb-derived glandular organs that transiently appear on the first abdominal segment in embryos of insects from majority of “orders”. They are missing in the genetic model Drosophila and little is known about them. Experiments carried out on orthopteran insects 80 years ago indicated that the pleuropodia secrete a “hatching enzyme” that digests the serosal cuticle to enable the larva to hatch, but evidence by state-of-the-art molecular methods is missing.

Results

We used high-throughput RNA-sequencing to identify the genes expressed in the pleuropodia of the locust Schistocerca gregaria (Orthoptera). First, using transmission electron microscopy we studied the development of the pleuropodia during 11 stages of the locust embryogenesis. We show that the glandular cells differentiate and start secreting just before the definitive dorsal closure of the embryo and the secretion granules outside the cells become more abundant prior to hatching. Next, we generated a comprehensive embryonic reference transcriptome for the locust and used it to study genome wide gene expression across ten morphologicaly defined stages of the pleuropodia. We show that when the pleuropodia have morphological markers of functional organs and produce secretion, they are primarily enriched in transcripts associated with transport functions. They express genes encoding enzymes capable of digesting cuticular protein and chitin. These include the potent cuticulo-lytic Chitinase 5, whose transcript rises just before hatching. Unexpected finding was the enrichment in transcripts for immunity-related enzymes. This indicates that the pleuropodia are equipped with epithelial immunity similarly as barrier epithelia in postembryonic stages.

Conclusions

These data provide transcriptomic support for the historic hypothesis that pleuropodia produce cuticle-degrading enzymes and function in hatching. They may also have other functions, such as facilitation of embryonic immune defense. By the genes that they express the pleuropodia are specialized embryonic organs and apparently an important though neglected part of insect physiology.

Background

An integral part of insect embryogenesis is the transient appearance of enigmatic glandular organs on the first abdominal segment (A1) that are called pleuropodia [1, 2] (Fig. 1a-c). While many temporary structures of animal embryos have no use the pleuropodia appear to be functional organs. What exactly their function is remains uncertain. The pleuropodia originate by a peculiar modification of a pair of limb buds [3,4,5] and form external vesicles in some species while in others they sink down into the body wall (reviewed in e.g., [2, 6, 7]). The pleuropodia have been found in at least some species of nearly all insect “orders”, but are absent in some, like Diptera, Hymenoptera and advanced Lepidoptera such as silkworms (e.g., [5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29]). Perhaps because the pleuropodia are missing in larvae and do not develop in the genetic model Drosophila, they have been neglected in recent decades. The genes expressed during the active stages of pleuropodia are unknown.

Fig. 1
figure1

External morphology of fully developed pleuropodia in embryos of a locust Schistocerca gregaria. Scanning electron microscopy (SEM) images show pleuropodia that have just reached final cellular differentiation, stage 8 days in Fig. 2. (a) Whole embryo, yolk was removed. (b) Enlarged left pleuropodium. (c) Cross section through A1. Pleuropodium is marked with an arrow. A1, the first abdominal segment; h, head; L3, hind (third) leg; y, yolk. Scale bars: in (a), 1 mm; in (b), 100 μm; in (c); 500 μm

Eighty years ago Eleanor Slifer [30, 31] demonstrated that the pleuropodia of the grasshopper Melanoplus differentialis are necessary for the digestion of serosal cuticle (SC) before hatching. SC is a chitin and protein-containing sheet structurally similar to larval and adult cuticles and is produced by extraembryonic serosa in early embryogenesis [32, 33]. SC makes a layer just under the chorion and forms a sac-like structure around the embryo and yolk. Shortly before hatching the inner layer of SC (procuticle), which forms the major part of the cuticle, disappears. When Slifer [30] removed pleuropodia from embryos, SC remained thick and the hatching larva could not break through it to get out of the egg. She proposed that pleuropodia secrete the “hatching enzyme”. The exact molecular composition of this substance is unknown, but we may assume that it is similar to the cuticle degrading moulting fluid (MF) that is released by larval epidermis under the old cuticle when the insect is preparing to moult [34].

In a few insects the ultrastructure of the cells in the pleuropodia was examined by transmission electron microscopy (TEM). These studies showed that the organs are primarily formed by an epithelium with morphological features of transporting and secretory epithelia [20, 25, 35,36,37,38,39]. In some insects, including orthopterans, the cells produce some secretion, but it is not clear if this is equivalent to the “ecdysial droplets” [40] carrying the MF. Some of Slifer’s experiments [30] were successfully repeated on other orthopterans [41] and an extract from pleuropodia was capable of digesting pieces of SC [42], but validation by genetic methods, such as that the pleuropodia express genes for cuticle-degrading enzymes, is missing.

Endocrinologists Novak and Zambre [43] questioned Slifer’s conclusions by arguing that according to her hypothesis SC would be digested in an unusual way compared to a typical larval cuticle. During larval moulting epidermal cells deposit a cuticle and subsequently the same epidermal cells, not a special gland, secrete MF. Therefore, they [43] proposed that the SC degrading enzymes would most probably be secreted by the serosa itself. Based on their studies in the locust (swarming grasshopper) Schistocerca gregaria, they suggested that the pleuropodia reach the peak of their activity in young embryos during katatrepsis and stimulate the serosa, to secrete the “hatching enzyme”. At katatrepsis the serosa is still present, but from that on it starts to shrink and completely degenerates by the time of dorsal closure in mid-embryogenesis [44]. Novak and Zambre [43] proposed that the stimulating substance released by the pleuropodia is likely a small molecule with the properties of the moulting hormone ecdysone or ecdysone itself and they carried out experiments in support of that. When a homogenate from pleuropodia was injected into the abdomen of the final instar larva of Drosophila that had been isolated (by a ligature) from the ecdysone producing prothoracic gland, the cuticle darkened like at pupariation. A similar effect was achieved by injection of ecdysone.

As a first step towards understanding the function of the pleuropodia we identified the genes that they express. We chose S. gregaria as a model, because first, it has large embryos (eggs > 7 mm long) and external pleuropodia that can easily be dissected out, second, previous experimental studies addressing the function of pleuropodia were carried out in orthopterans, and third, it is a model pest that is also used for physiological and developmental-genetic studies. Using TEM we were able to examine 11 developmental stages of the pleuropodia at high resolution. This helped us to identify when exactly the organs are fully developed and produce secretion. No detailed staging system using TEM exists for the pleuropodia of S. gregaria or any other orthopteran. Using high-throughput RNA sequencing (RNA-seq) we sequenced transcriptomes of ten morphologically defined stages of the pleuropodia and similarly aged hind legs and performed differential gene expression analysis between the two appendages. This enabled us to identify the transcripts enriched in the pleuropodia. The leg was chosen for comparison because the pleuropodium is a modified leg. The goal of this paper was to investigate whether the gene expression profile of the fully developed and secreting pleuropodia supports that these organs produce the “hatching enzyme”. We show that the pleuropodia of S. gregaria indeed express genes for some of the cuticle degrading enzymes previously identified in the MF. This brings a trancriptomic support for the Slifer’s historic hypothesis [30, 31]. As a part of our study we assembled a full embryonic transcriptome of S. gregaria, whose genome has not been sequenced yet.

Results

Development of pleuropodia in the course of S. gregaria embryogenesis

Under our incubation conditions (see Methods) S. gregaria embryogenesis lasts 14.5 days (100 % developmental time, DT) (Fig. 2a, Additional file 1: Figure S1). We followed the development of the pleuropodia from the age of 4 days (27.6 % DT), when all appendages are similar looking short buds, until just before hatching, day 14 (Fig. 2b, Additional file 1: Figures S2-S3). Simultaneously, we followed the development of the hind leg, which we used for comparison.

Fig. 2
figure2

Summary of the development of pleuropodia in S. gregaria embryos. (a) Scheme of S. gregaria embryogenesis marking key developmental events in the embryos and timing of the two experiments on pleuropodia. Numbers above the scale are days from egg-laying, numbers below the scale are percent of embryonic developmental time. Yellow boxes indicate the stages that were sampled for RNA-seq. Eggs with the developing embryos at each stage are shown below the scale, insets for the 4–8 day stages show the embryo dissected out from the egg. (b) External features of the developing pleuropodia; after hatching part of the stretched exuvia is shown; the degenerated pleuropodium is marked with an arrow. (c) Paraffin sections through the pleuropodium and surrounding tissue. Pleuropodia are marked with arrowheads. Anti-Phospho-Histone H3 antibody (green) detects cell divisions in the immature glandular cells (tip of appendage bud) on day 4 and 5, not in later stages. The pleuropodial stalk cells, haemocytes entering the pleuropodia and cells in other tissues were labeled. Nuclei (grey) enlarge from day 6. The text below the pictures refers to the main events in the glandular cells. EX, exuvia; L, larva. Scale bars: in (a) (eggs), 1 mm; in (b), 0.2 mm. Background was cleaned in photos in (a) (see Methods)

We traced cell divisions in the pleuropodia by using Phospho-Histone H3 as a marker (Fig. 2c). The glandular cells were labeled only in the days 4 and 5. From day 6 onwards no cell divisions were detected and the nuclei started to enlarge as the cells became polyploid [45].

Although the pleuropodia get their final external mushroom-like shape just before the embryos undergo katatrepsis (day 6; 41.4 % DT) (Fig. 2a,b), (Fig. 3) the glandular cells fully differentiate only later, shortly before dorsal closure (day 8; 55.2 % DT). The differentiated cells (Fig. 3c-e, j-p), compared to the immature ones (Fig. 3f-i) have fully developed apical microvilli, abundant mitochondria below the microvilli and some inside the microvilli, developed rough and smooth endoplasmic reticula. The cells form a single-layered epithelium and secretion granules inside and outside of them become visible (Fig. 3a-e, j). The granules outside of the cells first appear at the base and in between the long apical microvilli (brush-border) (Fig. 3e,j). Similarly as it has been observed in other insects [25, 35,36,37,38,39], the whole pleuropodium is covered with a thin embryonic cuticle (“the first embryonic cuticle”, EC1); the tips of the microvilli produce fibrous material that is a part of this cuticle (Fig. 3e) (compare with similar fibers above the leg epidermis in Additional file 1: Figure S4).

Fig. 3
figure3

Ultrastructure and development of secretory activity in pleuropodia of S. gregaria. (a)-(e) Main features of the cells in the fully formed pleuropodia. Pleuropodia just before dorsal closure are shown: (a-d), 8 days; (e), 8.5 days. (a) Cross section through the pleuropodium. Apical (“outer”) and basal (“inner”) side of the cells is labeled. (b) Stalk cell. The short microvilli at the apical side are associated with the deposition of fibres in the embryonic cuticle (EC1). (c)-(e) Glandular cells. Note in (e) that the secretion granule is located at the base of the microvilli (brush-border); the tips of the microvilli produce fibrous material that is a part of the embryonic cuticle (EC1). (f)-(p) Ontogenesis of the glandular cells. Note the development of the microvilli, which is for day 4–7 shown at higher magnification in insets (f)-(i) (compare with fully developed microvilli shown at high magnification in (d) and (e)), accumulation of mitochondria below, mitochondria entering the microvilli, presence of smooth and rough endoplasmic reticula and the onset of secretion (appearance of secretion granules within and above the microvilli). (a) is a toluidine blue stained semithin section, (b)-(p) TEM micrographs. Secretion granules are marked with magenta arrows. Asterisks mark mitochondria inside microvilli. Black arrowheads mark the infolding of the basal plasma membrane (basal labyrinth) shown in (c), white arrowheads mark the spaces between neighboring cells. bm, basement membrane; cch, condensed chromatin; cj, cell junction; dv, dense vesicle; EC1, the first embryonic cuticle; gly, glycogene; ld, lipid droplet; mit, mitochondria; mv, microvilli; nu, nucleus; rer, rough endoplasmic reticulum; ser, smooth endoplasmic reticulum; sp., “spot” of a different electron-density in the pleuropodial granules. Scale bars: in (b), (c), (d), (e) and (f) for (f)-(p), 2 μm; inset in (f) for inset in (f) and (g), 500 nm, inset in (h) for inset in (h) and (i), 500 nm

As development progresses the secretion granules (inside and outside the cells) become more abundant and are present also above the microvilli (Fig. 3k-p). On day 12 the apical side of the glandular cells changes: clusters of microvilli (usually at the borders between cells) elevate (Fig. 3n). Later the cells show signs of degeneration, the chromatin condenses and the cell content becomes disorganized (Fig. 3o,p). Large secretion granules are still abundant and probably released even on the last day before hatching, when the pleuropodia have shrunk and collapsed (Figs. 2b,3p).

When the embryo moults (embryonic cuticle that had been deposited by the epidermal cells of the embryo detaches from these cells, which then secrete a new cuticle), first at about 8.5 days and again just before 12 days (Fig. 2a, Additional file 1: Figure S4), ecdysial droplets are present below the apolysed cuticle. These droplets are very similar at both moults (compare Fig. 4a and b; also shown in Additional file 2: Figure S4f and i). They are very similar, but not identical to the granules released by the pleuropodia (compare Fig. 4c and d). The glandular cells of the pleuropodia do not moult and keep the cuticle EC1 their whole life-time.

Fig. 4
figure4

Granules secreted from pleuropodia of S. gregaria resemble ecdysial droplets. Release of ecdysial droplets by embryonic epidermis on a hind leg during the first (a) and the second (b) embryonic moult, on day 9 and day 12, respectively. (c) Ecdysial droplet secreted during the second embryonic moult at higher magnification and (d) granules secreted from pleuropodia at the same developmental stage. The pleuropodial granules are typically larger, less compact and with non-homogeneous electron density. EC1, EC2, the first and second embryonic cuticles; ed, ecdysial droplets; mv, microvilli; pg, granules secreted from the pleuropodia; PLP, pleuropodium; sp, “spot” of a different electron-density in the pleuropodial granules. Scale bars: in (a) and (b), 2 μm; in (c) for (c) and (d), 500 nm

At hatching, the larva enclosed in the apolysed second embryonic cuticle (EC2) leaves the eggshell and digs through the substrate up to the surface [46, 47]. Here the EC2 is shed and the degenerated pleuropodia are removed with it ([7]; Fig. 2a).

Therefore, the timing of the high secretory activity (from ±69 % DT until just before hatching) corresponds to the stages when Slifer [30] demonstrated the presence of the “hatching enzyme” (Fig. 2a). By contrast, pleuropodia from embryos around katatrepsis (± 41–48 % DT) that Novak and Zambre [43] used for their experiments do not appear fully differentiated and secretory yet. Next we looked at the genes expressed in the pleuropodia.

Isolation of genes expressed in the pleuropodia of S. gregaria using RNA-seq

Prior to the gene expression analysis we prepared a comprehensive embryonic transcriptome that served as a reference (see Methods). It consists of 20,834 transcripts (Additional file 2: Table S1) and we aimed each transcript to represent one gene. The completeness of the transcriptome was assessed using the open-source software BUSCO (version 3) [48, 49]. 95.6, 96.3 and 94.6 % of the Metazoa, Arthropoda and Insecta orthologs, respectively, were found, a level comparable to published “complete” transcriptomes.

We generated a comparative RNA-seq dataset from ten stages of developing pleuropodia and hind legs (Fig. 2a). We dissected pleuropodia and legs from the embryos and sequenced their mRNAs. For each stage we performed a differential gene expression analysis between a sample from pleuropodia and a sample from legs (Fig. 2a, Additional file 2: Table S2). A principal component analysis (PCA) confirmed that pleuropodia and legs are not only morphologically similar at early stages, but share a transcriptomic landscape as well (Fig. 5a). The expression profiles diversify as the appendages progressively develop into completely different structures. The number of differentially expressed genes (DEGs) rises with age (Additional file 2: Table S3). For genes whose expression dynamics in the pleuropodia are known, such as Ubx, abd-A, dll and dac (e.g., [3, 50,51,52,53,54]), we confirmed that they were up- or downregulated in our RNA-seq dataset as predicted (Additional file 2: Table S4). To further validate the dataset, we carried out real-time RT-PCR on 46 selected genes in several stages (176 cases in total) and got results consistent with the sequencing data (Additional file 2: Table S5).

Fig. 5
figure5

Principal component analysis (PCA) plot on genes expressed in legs and pleuropodia at ten embryonic stages. Samples from young embryos are genetically more similar and cluster together, while samples from advanced stages are genetically more distant and also separated on the plot. Rlog transformed read counts

Since we here focus on the secreting pleuropodia we pooled the data from samples 10, 11 and 12 days together (pleuropodia and legs separately), and treated them as triplicates. These are samples from embryos after dorsal closure, when secretion granules are highly abundant above the pleuropodial cells, but the organs are not in advanced state of degeneration yet (day 13) (Figs. 2a, 3l-n). We found 781 transcripts upregulated and 1535 downregulated in pleuropodia (compared to legs) (Additional file 2: Table S3). Table 1 shows the top 10 % of the most highly abundant (“expressed”) upregulated transcripts (abundance measured in RPKM units, “reads per kilobase of transcript per million reads mapped”).

Table 1 Top 10 % of the most abundant transcripts upregulated in the highly secreting pleuropodia

GO enrichment analysis, graphically summarized in Fig. 6 (full set of enriched GO terms are in Additional file 2: Tables S6, S7; GO terms enriched at each developmental stage are in Additional file 2: Tables S8, S9), showed that the genes downregulated in pleuropodia, thus upregulated in legs, are enriched in GO terms associated with development and function of muscles and cell division. This is consistent with the absence of muscles in the pleuropodia that are fully differentiated organs at this stage, while the legs are growing in size and developing muscle tissue (Fig. 2c).

Fig. 6
figure6

Dot plot visualization of GO terms enriched in DEGs in the highly secreting pleuropodia. Representative groups of GO terms enriched in genes that are (a) downregulated in pleuropodia (in comparison to legs) and (b) upregulated in pleuropodia. Major clusters are labeled. Relevant GOs are marked with an arrow. Bubble color indicates the p-value of the GO term, the size indicates the frequency of the GO term in the underlying Gene Ontology Annotation (GOA) database (bubbles of more general terms are larger). biog., biogenesis; comp., compound; electrochem., electrochemical; grad., gradient; metab., metabolic, organiz., organization; path., pathway; pr., process; regul., regulation; resp., response; signal., signaling; transp., transport

The upregulated genes are primarily enriched in GO terms (Fig. 6, Additional file 2: Table S7) associated with active transport, which is consistent with that the pleuropodia have morphological characteristics of transporting organs. Genes for both V-ATPase and Na+, K+ ATPase are upregulated (Additional file 2: Table S10). We found enriched GO terms linked with lysosome organization, consistent with the observation that the pleuropodia contain numerous lysosomes (Fig. 3, [37]). We also found a cluster of GO terms associated with lipid metabolism, consistent with the presence of smooth endoplasmic reticulum in the cells (Fig. 3). Therefore, the genes differentially expressed between legs and pleuropodia are in agreement with the morphology of the organs.

Insect cuticle, such as SC, is digested by a cocktail of enzymes that degrade chitin, which is an aminoglycan polymer, and proteins [34, 55, 56]. In support of Slifer’s experiments demonstrating that pleuropodia produce cuticle degrading enzymes we found that these organs upregulate genes associated with carbohydrate derivative metabolism, aminoglycan catabolic process and proteolysis. A novel interesting finding was the upregulation of genes associated with immunity. Next we looked at particular genes in a detail.

Pleuropodia upregulate genes for cuticular chitin degrading enzymes

Cuticular chitin is hydrolyzed by a two-enzyme system composed of a β-N-acetyl-hexosaminidase (NAG) and a chitinase (CHT) [56]. Both types of enzymes, a NAG and a CHT, have to be simultaneously present for efficient hydrolysis of chitin [57].

Insect NAGs split into four major classes, of which chitinolytic activity was demonstrated for group I and II (Table 2) [58, 59]. Our transcriptome contains four NAG transcripts, each representing one group (Table 2, Fig. 7a-d, Additional file 1: Figure S5a, S6a). All were upregulated in the pleuropodia. Among them the Sg-nag2 for the chitinolitic NAG group II had the highest expression (among 46 most highly “expressed” genes, Table 1) and fold change between legs and pleuropodia. The abundance of transcripts for the chitinolitic NAGs starts to rise from day 6 (Fig. 7a,b) when the glandular cells in the pleuropodia begin to differentiate morphologically (Figs. 1 and 3). The expression profile of Sg-nag2, that we have chosen for validation, was similar by RNA-seq and real-time RT-PCR (compare Fig. 7b and b').

Table 2 RNA-seq differential gene expression of cuticular chitin-degrading enzymes in the highly secreting pleuropodia
Fig. 7
figure7

Expression profiles of NAGs and CHTs upregulated in the pleuropodia of S. gregaria across development. Top row: NAGs, bottom row: CHTs. (a)-(d) and (e)-(h): RNA-seq; expression in single-sample sequencing is shown. (b') and (e'): real-time RT-PCR. (b') is the same gene as in (b) and (e') is the same gene as in (e). Analysis of 3–4 technical replicates is shown. Expression in day 8 was set as 1. Values are mean ± s.d.

To see if the pleuropodia are the major source of the Sg-nag2 transcript in the embryo, we looked at its expression in various parts of the body (head, thorax, abdomen with pleuropodia, abdomen from which pleuropodia were removed) using real-time RT-PCR (Fig. 8a,b). We performed this analysis in embryos on day 6, when the pleuropodia are still immature, day 8, just at the onset of the secretory activity, day 10 and day 12 during active secretion. During all of the stages the abdomen with pleuropodia had the highest expression (A+ in Fig. 8b), although the expression was lower in the youngest sample (day 6) compared to the samples from older embryos (day 8, 10 and 12). This shows that the pleuropodia are the major source of mRNAs for this cuticle-degrading NAG.

Fig. 8.
figure8

Real-time RT-PCR expression analysis of Sg-nag2 and Sg-cht5–1 on cDNA from parts of S. gregaria embryos. (a) cDNA was prepared from mRNAs isolated from parts of embryos at the age of 6, 8, 10 and 12 days: H, head; T, thorax; A+, abdomen with pleuropodia; A-, abdomen without pleuropodia. For each age the same number of body parts was used (5–10) and RNA was resuspended in the same volume of water. The size of the pleuropodium is indicated by the yellow dot. (b) and (c): expression of Sg-nag2 and Sg-cht5–1, respectively. Analysis of 3–4 technical replicates is shown. Expression in A + 8 (abdomen with pleuropodia at stage when the organs first become differentiated) was set as 1. Numbers above A+ expression is fold change from A- of the same age

The insect CHTs have been classified into several groups [56, 60], of which the major role in the digestion of cuticular chitin is played by Chitinase 5 and (perhaps with a secondary importance) by Chitinase 10 [61, 62] (Table 2; the classification of CHTs into five major groups that we use here is based on [62]). Some chitinases, for example, are expressed in the gut, trachea and fat body, where they are likely involved in digestion of dietary chitin, turnover of peritrophic matrix and immunity, some epidermal chitinases organize assembly of the new cuticle (e.g., [60, 63,64,65,66]).

Our transcriptome contains 16 full or partial transcripts of CHTs representing all of the major CHT groups (Table 2, Additional file 1: Figure S5b, S6b). The pleuropodia specifically upregulate both of the genes for Chitinase 5, which show homology with cht5–1 and cht5–2 from the locust Locusta migratoria [67]. One of the transcripts, Sg-cht5–1, was among the top 15 most abundant transcripts upregulated in the highly secreting pleuropodia (Table 1). The predicted amino acid sequence of Sg-cht5–1 contains a conserved catalytic domain and a signal peptide, and thus is likely to be active and secreted, respectively (Additional file 1: Figure S5b). The other upregulated CHTs were homologs of cht2 and idgf. By contrast, the S. gregaria homolog of cht10 that also has a role in cuticular chitin hydrolysis and required for larval moulting [62, 64] had low expression in both legs and pleuropodia.

We next focused on the transcript of the major chitinase, Sg-cht5–1. Unlike the NAGs, both RNA-seq and real-time RT-PCR have shown that the expression of this CHT is low in the early secreting stages, rises only later around day 12 and reaches highest levels when the pleuropodia are already degenerating (day 13 and 14) (Fig. 7 e,f,e'). Also real-time RT-PCR on cut embryos has shown that the pleuropodia are a major source of the Sg-cht5–1 mRNA on day 12 but not before (the high expression in the whole embryo on day 10 could be linked to the second embryonic moult and was also observed with Sg-cht7, although not with Sg-cht10, Additional file 1: Figure S7). These data show that the pleuropodia before hatching express a cuticle-degrading chitinase.

Pleuropodia upregulate transcripts for some proteases that could digest a cuticle

Our GO enrichment analysis has shown that the secreting pleuropodia are enriched in transcripts for genes associated with proteolysis (Fig. 6, Additional file 2: Table S11). Transcripts for proteases and their inhibitors are abundant among the top 10 % of the most highly “expressed” upregulated DEGs (Table 1). To see if the upregulated transcripts encode enzymes that are associated with digestion of insect cuticle, we compared our data with the enzymes identified in the complete proteomic analysis of the MF from the lepidopteran Bombyx mori [55, 68]. Out of 69 genes that we searched, we found homologs or very similar genes in S. gregaria transcriptome for half of them (35). This made in total 75 transcripts, of which 27 were upregulated (seven among the top 10 % most highly expressed) and 15 downregulated (Tables 3, Additional file 2: Table S12). The prominent MF protease Carboxypeptidase A [55, 69] and the Trypsin-like serine protease known to function in locust moulting [70] were not upregulated in the pleuropodia. These data indicate that the pleuropodia upregulate transcripts for proteolytic enzymes associated with the degradation of the cuticle and would be able to contribute to the digestion of SC, although the enzymatic cocktail produced by the pleuropodia may not be identical with the MF.

Table 3 MF proteases that were upregulated in the highly secreting pluropodia

Pleuropodia are enriched in transcripts for immunity-related proteins

An observation that was not anticipated was the upregulation of genes for proteins involved in immunity [71, 72] (Figs. 6 and 9, Additional file 2: Table S13). This is especially interesting, because immunity related proteins have been found in the MF [55]. This is in agreement with that the cells in the pleuropodia are a type of barrier epithelium [71,72,73], which enables the contact between the organism and its environment. Barrier epithelia (e.g., the gut, Malpighian tubules or tracheae) constitutively express genes for immune defense.

Fig. 9
figure9

Schematic representation of key immunity-related genes expressed in the highly secreting pleuropodia of S. gregaria. Proteins whose transcripts were found in the pleuropodia are in black, number in the brackets is the number of upregulated transcripts. Proteins whose transcripts were not upregulated are in grey. Out of the total 25 serine proteases and 25 serpins, 14 and 15 are known to function in Toll signaling, respectively. AMP, antimicrobial peptide; GNBP, gram-negative bacteria-binding protein; GST, glutathione S-transferase; MP, melanization protease; NOS, nitric oxide synthase; PGRP, peptidoglycan recognition protein; PPO, pro-phenoloxidase; pxn, peroxiredoxin; RNS, reactive nitrogen species; ROS, reactive oxygen species; SPE, Spaetzle-processing enzyme

Fig. 10
figure10

Real-time RT-PCR expression analysis of genes for lysozymes on cDNA from parts of S. gregaria embryos. cDNA was prepared from mRNAs isolated from parts of embryos at the age of 6, 8, 10 and 12 days. Labeling of the body parts is explained on the left of this Figure; see also an immage summary in Fig. 8a. For each age the same number of body parts was used (5–10) and RNA was resuspended in the same volume of water. Analysis of 3–4 technical replicates is shown. Expression in A+ 8 (abdomen with pleuropodia at stage when the organs first become differentiated) was set as 1. Numbers above A+ expression is fold change from A- of the same age

In total we found upregulated 99 transcripts (13 % of the upregulated genes) for immunity-related proteins. These include proteins at all three levels, the pathogen recognition, signaling and response (Fig. 9, Additional file 2: Table S13). From the four signaling pathways, Toll was upregulated, but not IMD or JAK/STAT, and from the JNK signaling we found c-Jun. Genes for a range of immune responses were upregulated, including production of reactive nitrogen species (RNS), melanization, genes for lysozymes and one antimicrobial peptide (AMP) similar to Diptericin.

The transcripts for lysozymes were among the most highly expressed (Table 1) and we chose to focus on them. Lysozymes are secreted proteins that kill bacteria by breaking down their cell wall. Our S. gregaria transcriptome contains nine genes for lysozymes, seven of which were upregulated (Table 4, Additional file 2: Table S14). The second most highly expressed DEG was a transcript for a C-type lysozyme (Sg-LyzC-1) that was previously shown to have anti-bacterial properties in S. gregaria [74] (Table 1). We examined expression of five selected genes on cut embryos by real-time RT-PCR (Fig. 10). Our data showed that the pleuropodia are the major source of mRNAs for these genes.

Table 4 RNA-seq differential gene expression of S. gregaria lysozymes in the highly secreting pleuropodia

Pleuropodia do not upregulate the pathway for ecdysone biosynthesis

Previous work has suggested that pleuropodia may be embryonic organs producing the moulting hormone ecdysone [43]. During post-embryonic stages, ecdysone is synthesized in the prothoracic glands and several other tissues by a common set of enzymes [75,76,77], some of which have been characterized in the locusts [78,79,80,81]. As shown in Drosophila, these genes are expressed in diverse cell types in embryos, and when the larval prothoracic glands are formed their expression co-localizes there [82,83,84,85,86].

Out of the nine genes critical for ecdysone biosynthesis, only one (dib) was upregulated in the highly secreting pleuropodia (Table 5, Additional file 2: S15). One gene (spo) was downregulated. The pleuropodia are not enriched in the whole pathway at any time of development, including around katatrepsis, in which experiments supporting the synthesis of moulting hormone were carried out (Additional file 2: Table S9, S16). Under the GO term “hormone biosynthetic process” enriched in the highly secreting pleuropodia (Additional file 2: Table S7, S17) we found a gene Npc2a that also functions in ecdysone biosynthesis in Drosophila [87]. It encodes a transporter of sterols, which include precursors of ecdysone. The enzyme functions as a general regulator of sterol homeostasis in diverse tissues and may have other roles in the pleuropodia than ecdysone biosynthesis. We conclude that our transcriptomic data provide little evidence that the pleuropodia are involved in ecdysone biosynthesis.

Table 5 RNA-seq differential gene expression of S. gregaria ecdysone biosynthesis enzymes in the highly secreting pleuropodia

Discussion

Pleuropodia of S. gregaria release secretion granules from shortly before dorsal closure until hatching

Using TEM we showed that the glandular epithelium in the pleuropodia of S. gregaria fully develops shortly before dorsal closure, on day 8 in our staging (55 % DT), when granular secretion outside the cells becomes visible. On day 6 and 7, which surround katatrepsis (45 % DT), the glandular cells only begin to differentiate and do not secrete. This would explain why no digestive effect on SC was detected by Novak and Zambre [43] when using a homogenate from S. gregaria pleuropodia isolated at around katatrepsis.

Pleuropodia at stages before and after katatrepsis were previously examined by TEM in other orthopterans, Eyprepocnemis plorans, Ailopus thalassinus and Ailopus strepens [39]. Unlike our observations on S. gregaria, this study detected release of secretion granules already in stages preceding katatrepsis. Their images (presence of secretion granules outside cells that have long microvilli, thick layer of fibres released from the tips of microvilli forming the EC1 cuticle) corresponds to developmentally more advanced pleuropodia, of S. gregaria, around day 8 or 8–9 (compare e.g., Fig. 3a in [39], before katatrepsis with our Fig. 3h,i, before and just after katatrepsis). This might be because in different species the glandular cells differentiate at different speed or the samples studied by Viscuso and Sottile [39] were taken from embryos that were slightly older than described. The fine staging and sampling at precise developmental age in our study on S. gregaria supports that pleuropodia of orthopterans (Orthoptera: Caelifera) are not yet functional at katatrepsis. All pleuropodia that we examined from several 6- and 7-day embryos (before and after katatrepsis) gave similar results per stage (see Methods). Intense secretion from pleuropodia of S. gregaria that we observed after dorsal closure and close to hatching is in agreement with other TEM studies on orthopterans E. plorans, A. thalassinus, A. strepens [39] and Locusta migratoria [37].

Pleuropodia of S. gregaria express genes for the “hatching enzyme”

Our RNA-seq analysis revealed that the secreting pleuropodia highly express genes encoding enzymes that are capable of digesting a typical chitin-protein insect cuticle. These include genes for proteolytic enzymes similar to those present in the MF and cuticular chitin-degrading NAGs and Chitinase 5. The pleuropodia also express genes for Chitinase 2 and Idgf, which have low effect on cuticular chitin digestion, but were shown to organize proteins and chitin fibres during cuticle deposition and for Idgf to have an immune function [63, 64]. These CHTs may organize the fibres in the cuticle secreted by the pleuropodia (Fig. 3).

We showed that, while the expression of the Sg-nag1 and Sg-nag2 started to rise in parallel with the differentiation of the glandular cells, the Sg-cht5–1 and Sg-cht5–2 transcripts raised shortly before hatching. Chitinase 5 is a critical chitin-degrading chitinase in insects: it is highly abundant in the moulting fluid and its silencing in diverse insects including the locust L. migratoria leads to failure in larval moulting [55, 62, 64, 67, 88] and as shown in L. migratoria also in moulting of the embryonic cuticle [89]. Our data indicate that the sudden rise in the expression of Sg-cht5 in the pleuropodia at the end of embryogenesis and presumably secretion of this CHT into the extraembryonic space is an important component of the “hatching enzyme” effect [30, 31] in locusts and grasshoppers. Since silencing of this single gene in embryos of L. migratoria did not prevent hatching [89], we conclude that the other chitin and protein degrading enzymes produced in the pleuropodia, and perhaps the serosa (see below), are essential as well.

Pleuropodia in some other insects could secrete the “hatching enzyme” and their function may also vary among species

There is evidence to suggest that the process occurs similarly in some insects. As in orthopterans, the pleuropodia of the rhagophthalmid beetle Rhagophthalmus ohbai release secretion after katatrepsis and SC rapidly degrades just shortly before hatching [17]. In the large water true bugs from the family Belostomatidae, the male carries a batch of eggs on his back. It is believed that the detachment of the eggs just before hatching is also caused by the secretion from the pleuropodia [90].

The molecular mechanism of SC degradation may also vary between insects and as previously hypothesized [43] the serosa may contribute to the SC degradation. The serosa of the beetle Tribolium castaneum, expresses cht10 and cht7 [33], of which the former CHT is important for cuticular chitin digestion. Silencing of cht10, but not cht5 prevented the beetle larvae from hatching [62]. Transcripts for cht10 were not upregulated in the pleuropodia of S. gregaria. This suggests that the SC is degraded by enzymes produced by both, the serosa and the pleuropodia and that the indispensable roles in cuticle digestion are played by different enzymes in different insects. Likely, the serosa, before it degenerates in mid-embryogenesis, releases some of the SC degrading enzymes, but these do not make up the complete cocktail that would be able to digest the cuticle efficiently. The secretion from the pleuropodia than adds the missing enzymes.

In some insects the pleuropodia may not be involved in hatching but have another function. In the viviparous cockroach Diploptera punctata [38], the secretion from the pleuropodia is very low and the large pleuropodia of the melolonthid beetle Rhizotrogus majalis have not been observed to produce any secretion granules at all [20]. In dragonflies, one of the more basal lineages of insects, the secretion likely has a different function than in orthopterans, because their SC is not digested before hatching [8]. The special epithelium in the pleuropodia shares features with transporting epithelia [36, 38] that function in water transport and ion balance [91]. Our data do not exclude this function, but it is yet to be tested. Our data do not support that the pleuropodia specialize in producing the moulting hormone [43] because they do not upregulate the whole set of the moulting hormone ecdysone biosynthetic enzymes. However, it cannot be excluded, that the pleuropodia produce some ecdysone intermediates; particularly products of biosynthetic steps catalyzed by the dib and spo enzymes that we found upregulated at some stages.

The pleuropodia of S. gregaria are enriched in transcripts for enzymes functioning in immunity

We found that many of the genes expressed in the pleuropodia encode proteins involved in immunity [72]. This indicates that the pleuropodia are also organs of epithelial immunity, similar to other barrier epithelia in postembryonic stages (such as the gut) [73], which are in a constant contact with microorganisms. The pleuropodia differ from such tissues in that they are not directly exposed to the environment, but enclosed in the eggshell, seemingly limiting their contact with microorganisms. Proteins associated with immune defense are also found in the MF [55], where they prevent invasion of pathogens through a “naked” epidermis after the separation of the old cuticle from the epidermis in the process of apolysis. As found in the beetle T. castaneum, during the early embryonic stages the frontier epithelium providing the egg with an immune defense is the extraembryonic serosa [92]. The serosa starts to degenerate after katatrepsis and disappears at dorsal closure [44]. The pleuropodia of S. gregaria differentiate just before dorsal closure, suggesting that they take over this defense function in late embryogenesis. It will be interesting to clarify in the upcoming research whether apart from their role in hatching the pleuropodia are important organs for fighting against potential pathogens that have gained access to the space between the embryo and the eggshell.

Evolution of the pleuropodia

Although only the functions of pleuropodia in digestion of SC and production of the moulting hormone in orthopterans were supported experimentally, current little data indicate that the function of these organs has been changing during evolution. In the diverse insect lineages that have them, the ultrastructure of the cells in pleuropodia appear similar, but the organs have different shapes. Hypothetically then, the glandular and/or water and ion transporting cells [20, 25, 35,36,37,38,39] were adapted to suit the needs of the developing embryo, such as digestion of the tough SC in orthopterans [30] or exchanging fluids and ions by particularly elongated pleuropodia in viviparous cockroaches [38]. In advanced insect lineages this type of cells is likely not needed and the pleuropodia do not develop. Future research by modern techniques is needed to uncover the diverse functions of these ancient insect organs and their role in insect evolution, physiology and development.

Conclusions

Transcriptomic profiling of pleuropodia from S. gregaria supports that the conclusions that Eleanor Slifer drew from her experiments over 80 years ago that these organs secrete cuticle degrading enzymes, were correct. The pleuropodia likely have other functions, such as in immune defense. The pleuropodia appear to be true live embryonic organs and likely an important but neglected part of insect physiology. The sequencing data that we generated will in future studies enable to dissect the functions of these enigmatic organs in a detail.

Methods

Insects

Schistocerca gregaria (gregarious phase) originated from a long-term colony at the Department of Zoology, University of Cambridge. Eggs were collected into pots with damp sand in two- or four-hour intervals. The pots with eggs were stored in an incubator at 30 °C, in constant darkness and the sand was kept moist.

Imaging of embryonic stages

Embryos and appendages were dissected in phosphate buffer saline (PBS). Whole eggs were treated with 50 % household bleach to dissolve the chorion. All were photographed using the Leica M125 stereomicroscope equipped with DFC495 camera and associated software. Photos were processed using Adobe Photoshop CC 2017.1.1. Photos of eggs and embryos (Fig. 2a and Additional file 1: Figure S1) had the background cleaned using the software.

Immunohistochemistry on paraffin sections

Embryos were dissected in PBS and pieces including A1 were fixed in PEMFA (4 % formaldehyde in PEM buffer: 100 mM PIPES, 2.0 mM EGTA, 1.0 mM MgSO4) at room temperature (RT) for 15–30 min, washed in PBT (PBS with 0.1 % Triton-X 100) and stored in ethanol at − 20 °C. Samples were cleared 3 × 10 min in Histosol (National Diagnostics) at RT, infiltrated with paraffin at 60 °C for 2–3 days and hardened in moulds at RT. Sections 6–8 μm thick were prepared on a Leica RM2125RTF microtome. Slides with sections were washed with Histosol, ethanol and re-hydrated to PBT. Slides were placed in a humidified chamber, blocked with 10 % sheep serum (Sigma-Aldrich) in PBT for 30 min at RT and incubated with Phospho-Histone H3 antibody (Invitrogen) diluted 1:130 at 4 °C overnight, Alexa Fluor 568 anti-rabbit secondary antibody (Invitrogen) diluted 1:300 at RT for 2 h and DAPI (Invitrogen) diluted 1:1000. Sections were imaged with a Leica TCS SP5 confocal microscope and photos processed using Fiji (https://fiji.sc).

Electron microscopy

For TEM embryos were dissected in PBS and pieces including A1 were fixed in 2.5–3.0 % glutaraldehyde in 0.1 M phosphate buffer (PB) pH 7.2 for a few hours at RT and at 4 °C for several days. Pleuropodia and legs were separated from other tissues and embedded into 2 % agar as previously [47]. Appendages in agar were incubated in solution of 3 % OsFeCN in cacodylate buffer with 4 mM CaCl2 for 1–2 days at 4 °C, 0.01 mg/ml thiocarbohydrazide (Sigma-Aldrich) for 20–30 min at RT in dark, 2 % OsO4 30–45 min at RT and 1 % uranyl acetate (pH 5.5) at 4 °C overnight. Washing steps were done with deionized water. Samples were dehydrated in ethanol, washed with dry acetone, dry acetonitrile, infiltrated with Quetol 651 resin (Agar Scientific) for 4–6 days and hardened in moulds at 60 °C for 2–3 days. Ultrathin sections were examined in the Tecnai G280 microscope. From each stage at least three pleuropodia and three legs were examined; all replications showed similar morphology.

For SEM whole embryos were fixed in 3 % glutaraldehyde in PB, post-fixed with OsO4, dehydrated in ethanol, critical point dried, gold coated, and observed in a FEI/Philips XL30 FEGSEM microscope. Photos from TEM and SEM were processed using Adobe Photoshop CC 2017.1.1.

Preparation of the reference transcriptome

The reference transcriptome includes transcripts that were assembled from (a) RNAs isolated from whole eggs and (b) RNAs isolated from legs and pleuropodia at a stage shortly before dorsal closure (sample “day 8–9”). (a) Whole egg transcriptome: Eggs from each 24-h egg collections incubated for the desired time were briefly washed with 50 % household bleach, washed with water and frozen in liquid nitrogen. Total RNA was isolated using TRIzol (Invitrogen), treated with TURBO DNase (Invitrogen) and purified on a column supplied with the RNAeasy Kit (Quiagen). The purified RNA from each of the 14 one-day samples was pooled into four: day 1–4, 5–7, 8–10 and 11–14. Ten μg of RNA from each was sent to BGI (Hong Kong). The total RNA was enriched in mRNA using the oligo (dT) magnetic beads and cDNA library was prepared using a standard protocol. 100 bp paired-end (PE) reads were sequenced on Illumina HiSeq 2000; the numbers of reads are in Additional file 2: Table S2. Non-clean reads were filtered using filter_fq. Transcripts from the samples were assembled separately using Trinity (release 20,130,225) [93]; parameters: --seqType fq --min_contig_length 100; −-min_glue 4 --group_pairs_distance 250; −-path_reinforcement_distance 95 --min_kmer_cov 4. The four assemblies were merged together to form a single set of non-redundant transcripts using TGICL software (version 2.1) [94]; parameters: -l 40 -c 10 -v 20. (b) Legs and pleuropodia transcriptome (age about 8.5–8.75 days): Appendages were dissected in RNase-free PBS and total RNA was isolated and cleaned as above. Ten μg of RNA from each leg and pleuropodium samples were transported to the Eastern Sequence and Informatics Hub, Cambridge (UK). cDNA libraries were prepared including mRNA enrichment. 75 bp PE reads were sequenced on Illumina GAIIX; the numbers of reads are in Additional file 2: Table S2. Reads were trimmed to the longest contiguous read segment for which the Phred quality score at each base Q > 13 (or 0.05 probability of error) using DynamicTrim (version 1.7) from the SolexQA package [95] and filtered to remove sequence adapter using Cutadapt (version 0.9) (http://code.google.com/p/cutadapt/). Sequences < 40 bp were discarded. The transcriptome was assembled using combination of Velvet (version 1.1.07) [96] (parameters: -shortPaired –fastq; −short2 –fastq; −read_trkg yes) and Oases (version 0.2.01) [97] (parameterss: -ins_length 350): the contigs that were output by Velvet were used by Oases to build likely transcripts from the RNA-seq dataset. K-mer sizes of 21, 25 and 31 were attempted for the two separate samples as well as the combined samples and optimal K-mer sizes of 21 were found for both samples.

Transcripts from the egg and legs plus pleuropodia transcriptomes were first merged with evigene (version 2013.03.11) using default parameters. Because this selection of transcripts (Selection 1) eliminated some genes (represented by zero transcripts, although the transcripts were present in the original transcriptomes), we repeated the step with less strict parameters (cd-hit-est - version 4.6, with -c 0.80 -n 5). This Selection 2 contained several genes represented by multiple transcripts, therefore we aligned Selection 1 and 2 to each other. Selection 1 was then completed by adding the missing transcripts from Selection 2. The resulting selection was edited as follows. Several redundant transcripts were removed manually: these were found by blasting diverse insect sequences against the transcriptome using the local ViroBLAST interface [98]. Some transcripts were edited manually: e.g., when we found that two transcripts were combined into one (S. gregaria transcript blasted against sequences in GenBank resulted in different parts in high scoring alignments against different protein sequences) we split the transcripts, or when the transcript had a frameshift mutation that was not in the other transcripts from the mRNA, we corrected this. These manually changed transcripts were found during a random inspection of the selection. The resulting selection was blasted against itself (Blast+ suite, version 2.6.0) and if there was an alignment spanning ≥300 bp with a sequence identity of ≥98 % the redundant shorter transcript was removed. Transcripts < 200 bp were discarded. These steps were carried out in R [99] using the Biostrings package [100].

Sequence analysis

Basic transcript analysis was done using CLC Sequence Viewer7 (QIAGEN). Signal peptide and transmembrane regions were predicted by Phobius [101]. Conserved domains were identified using SMART (http://smart.embl-heidelberg.de/). The reference transcriptome was annotated using Trinotate (version 3.1.1) [102]. The longest candidate ORF of each transcript was identified using the inbuilt software TransDecoder [102]. The transcriptome was blasted against Uniprot sequences of Schistocerca gregaria, Locusta migratoria, Apis melifera, Tribolium castaneum, Bombyx mori and Drosophila melanogaster (blastx with default parameters and -max_target_seqs 1).

RNA-seq expression analysis

Pleuropodia and legs from embryos at the same age (day 4, 5, 6, 7, 8, 10, 11, 12 and 13) were dissected in RNase-free PBS and total RNA was isolated as described above, but cleaned with RNA Clean & Concentrator (Zymo Research). One μg of RNA from each sample was sent to BGI (Hong Kong). cDNA was prepared including mRNA enrichment as above. Over 45 millions of 50 bp single-end (SE) reads were sequenced from each sample (Additional file 2: Table S2) on Illumina HiSeq 2000. A pair of samples from embryos that was used for the preparation of the reference transcriptome, part (b) above (“day 8–9”), was included in the expression analysis, but prior to mapping, the 75 bp PE reads were trimmed to 50 bp, using Trimmomatic in the paired-end mode (version 0.36) and using the CROP function (CROP:50). Each sample for expression analysis contained tens to hundreds of appendages. A single sample from each pleuropodia and legs was sequenced per stage.

The quality of the sequenced reads was assessed using the FastQC. All samples showed a Per base sequence quality > 30. Reads were mapped to the reference transcriptome using Bowtie2 (version 2.2.5) with default parameters and –local alignment mode [103]. Trimmed pairs of reads were concatenated for each stage and treated as single reads. A PCA plot was prepared using the plotPCA() function in the DESeq2 R package [104]; the count matrix was transformed with the rlog() function. The plot showed that differences in sequencing type and processing of SE and PE samples had no noticeable effect on the results. The R package HTSFilter [105] was used with default parameters to remove transcripts with constantly low expression; 12,988 transcripts were left.

The differential expression analysis was performed using the NOISeq R package (version 2.22.1 [106];). Reads were normalized using the RPKM method [107]. DEGs between legs and pleuropodia for each stage were searched using NOISeq-sim; parameters for simulation of “technical replicates” prior to differential expression analysis without replicates: k = NULL, norm = “n”, pnr =0.2, nss =5, v = 0.02, lc = 1, replicates = “no”. DEGs between highly secreting pleuropodia and equally aged legs (samples from day 10, 11 and 12 treated as replicates) were searched using the NOISeq-real algorithm; parameters: k = 0.5, norm = “n”, factor = “type”, nss = 0, lc = 1, replicates = “technical”. Thresholds for significant differential expression were probability (“prob”) > 0.7 for single stage comparisons and > 0.8 for the triplicated comparison, RPKM > 10 and fold change > 2 for all comparisons (thresholds were set arbitrarily based on the values for the genes whose expression dynamics in the pleuropodia are known, Additional file 2: Table S4).

GO enrichment analysis

The transcriptome was blasted against the UniProt/Swiss-Prot database. GO enrichment with blast hits of an e-value ≤1e− 5 was performed using the R package GOSeq (version 1:30.0 [108];) implemented in the Trinotate pipeline (see above). Enriched GO terms were summarized and visualized using REVIGO [109]. Dot plots were prepared from DEGs having RPKM > 50, fold change > 3.

Real-time RT-PCR

Tissues were dissected, total RNA was isolated and DNase treated as described for sequencing and cleaned with RNA Clean & Concentrator (Zymo Research). cDNA was prepared from 0.5 μg (legs, pleuropodia) or 1 μg (cut embryos) of the RNA using oligo-dT primer (Invitrogen) and ThermoScript RT-PCR System (Invitrogen) at 55 °C (lower amount of RNA from legs and pleuropodia, compared to the amount of RNA from whole cut embryos, was used because this RNA was in a short supply and difficult to obtain since these appendages are small and had to be dissected). PCR reactions (20 μl) contained 5 μl of cDNA diluted to 40 ng/μl, 10 μl of SYBR Green PCR Master Mix (Applied Biosystems) and 5 μl of a 1:1 mix of forward and reverse primers (each 20 nM in this mix). Reactions were run in the LightCycler480 (Roche) and analyzed using associated software (release 1.5.0 SP1) according to comparative Ct method and normalized to the eEF1α gene. Amplification was 40 cycles of 95 °C for 10 s, 60 °C for 15 s, 72 °C for 12 s. Primers (Additional file 2: Table S18) were designed using Primer3PLUS [110]. To check for the presence of a single PCR product, the melting curve was examined after each run and for each pair of primers at least two finished runs were visualized on a 2 % agarose gel.

Availability of data and materials

The datasets generated and analysed during the study are available in the NCBI repository: BioProject ID PRJNA524786 (the reference transcriptome described in this paper is the first version, GHHP01000000) and GSE128394.

Abbreviations

A1:

First abdominal segment

CHT:

Chitinase

DEG:

Differentially expressed gene

DT:

Developmental time

EC1, EC2, EC3:

The first, the second, the third embryonic cuticle, respectively

GO:

Gene ontology

LEG:

Hind leg(s)

MF:

Moulting fluid

NAG:

β-N-acetyl-hexosaminidase

PCA:

Principal component analysis

PLP:

Pleuropodium (pleuropodia)

RPKM:

Reads per kilobase of transcript per million reads mapped

SC:

Serosal cuticle

SEM:

Scanning electron microscopy

T3:

Third thoracic segment

TEM:

Transmission electron microscopy

References

  1. 1.

    Rathke H. Zur Entwickelungsgeschichte der Maulwurfsgrille (Gryllotalpa vulgaris). Arch Anat Physiol wiss Med. 1844:27–37.

  2. 2.

    Wheeler WMM. On the appendages of the first abdominal segment of embryo insects. Trans Wis Acad Sci Arts Lett. 1889;8:87–140 pls 1–3.

    Google Scholar 

  3. 3.

    Bennett RL, Brown SJ, Denell RE. Molecular and genetic analysis of the Tribolium Ultrabithorax ortholog. Ultrathorax. Dev Genes Evol. 1999;209:608–19.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  4. 4.

    Lewis DL, DeCamillis M, Bennett RL. Distinct roles of the homeotic genes Ubx and abd-A in beetle embryonic abdominal appendage development. Proc Natl Acad Sci USA. 2000;97:4504–9.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  5. 5.

    Machida R. External features of embryonic development of a jumping bristletail, Pedetontus unimaculatus Machida (Insecta, Thysanura, Machilidae). J Morphol. 1981;168:339–55.

    PubMed  Article  PubMed Central  Google Scholar 

  6. 6.

    Hussey PB. Studies on the Pleuropodia of Belostoma flumineum Say and Ranatra fusca Palisot de Beauvois, with a discussion of these organs in other insects. Entomol Am. 1926;7:1–82.

  7. 7.

    Roonwall ML. Studies on the embryology of the African migratory locust, Locusta migratoria migratorioides Reiche and Frm. (Orthoptera, Acrididae). II. Organogeny. Philos Trans R Soc Lond B Biol Sci. 1937;227:175–244.

    Article  Google Scholar 

  8. 8.

    Ando H. The comparative embryology of Odonata with special reference to a relic dragonfly Epiophlebia superstes Selys: Sugadaira Biological Laboratory of Tokyo Kyoiku University; 1962.

  9. 9.

    Ando H, Haga K. Studies on the Pleuropodia of Embioptera, Thysanoptera, and Mecoptera. Tokyo U. Educ. Sugadaira Biol. Lab. Bull. 1974;6:1–8.

    Google Scholar 

  10. 10.

    Bedford GO. The development of the egg of Didymuria violescens (Phasmatodea: Phasmatidae: Podacanthinae) – embryology and determination of the stage at which first diapause occurs. Aust J Zool. 1978;18:155–69.

    Article  Google Scholar 

  11. 11.

    Fraulob M, Beutel RG, Machida R, Pohl H. The embryonic development of Stylops ovinae (Strepsiptera, Stylopidae) with emphasis on external morphology. Arthropod Struct Dev. 2015;44:42–68.

    PubMed  Article  PubMed Central  Google Scholar 

  12. 12.

    Graber V. Ueber den Bau und die phylogenetische Bedeutung der embryonalen Bauchänhange der Insekten. Biol Zent Bl. 1889;9:355–63.

    Google Scholar 

  13. 13.

    Hagan HR. The embryogeny of the polyctenid, Hesperoctenes fumarius Westwood, with the reference to viviparity in insects. J Morphol Physiol. 1931;51:3–115.

    Article  Google Scholar 

  14. 14.

    Heming BS. Origin and fate of pleuropodia in embryos of Neoheegeria verbasci (Osborn) (Thysanoptera: Phlaeothripidae). In: Bhatti JS, editor. Advances in Thysanopterology. New Delhi: Sciantia Publishing. Journal of Pure and Applied Zoology 4; 1993. p. 205–223.

  15. 15.

    Kamiya A, Ando H. 1985. External morphogenesis of the embryo of Ascalaphus ramburi (Neuroptera, Ascalaphidae). In: Ando H, Miya K, editors. Tsukuba: ISEBU Co Ltd.; 1985. p. 203–213.

  16. 16.

    Kobayashi Y, Ando H. Early embryonic development and external features of developing embryos of the caddisfly, Nemotaulius admorsus (Trichoptera: Limnephilidae). J Morphol. 1990;203:69–85.

    PubMed  Article  PubMed Central  Google Scholar 

  17. 17.

    Kobayashi Y, Suzuki H, Ohba N. Development of the pleuropodia in the embryo of the glowworm Rhagophthalmus ohbai (Rhagophthalmidae, Coleoptera, Insecta), with comments on their probable function. Proc Arthropod Embryol Soc Jpn. 2003;38:19–26.

    Google Scholar 

  18. 18.

    Lambiase S, Grigolo A, Morbini P. Ontogenesis of pleuropodia in defferent species of Blattaria (Insecta): a comparative study. Ital J Zool. 2003;70:205–12.

    Article  Google Scholar 

  19. 19.

    Larink O. Embryonic and postembryonic development of Machilidae and Lepismatidae (Insecta: Archaeognatha). Entomol Gen. 1983;8:119–33.

    Google Scholar 

  20. 20.

    Louvet JP. Ultrastrucutre du pleuropode chez l’embryon du hanneton Rhizotrogus majalis Razoum (Coleoptera: Melolonthidae). Int J Insect Morphol Embryol. 1983;12:97–117.

    Article  Google Scholar 

  21. 21.

    Machida R, Tojo K, Tsutsumi T, Uchifune T, Klass K-D, Picker MD, Pretorius L. Embryonic development of heel-walkers: reference to some prerevolutionary stages (Insecta: Mantophasmatodea). Proc Arthropod Embryol Soc Jpn. 2004;39:31–9.

    Google Scholar 

  22. 22.

    Mashimo Y, Beutel RG, Dallai R, Lee CY, Machida R. Embryonic development of Zoraptera with special reference to external morphology, and its phylogenetic implications (Insecta). J Morphol. 2013;275:295–312.

    PubMed  Article  PubMed Central  Google Scholar 

  23. 23.

    Miller A. Embryonic membranes, yolk cells, and morphogenesis of the stonefly Pteronarcys proteus Newman (Plecoptera: Pteronarcidae). Ann Entomol Soc Amer. 1940;33:437–77.

    Article  Google Scholar 

  24. 24.

    Miyakawa K. Embryology of the dobsonfly, Protohermes grandis Thunberg (Megaloptera: Corydalidae), I. Changes in External form of the embryo during development. Kontyû. 1979;47:367–75.

    Google Scholar 

  25. 25.

    Rost MM, Poprawa I, Klag J. Ultrastructure of the pleuropodium in 8-d-old embryos of Thermobia domestica (Packard) (Insecta, Zygentoma). Ann Entomol Soc Amer. 2004;97:541–7.

    Article  Google Scholar 

  26. 26.

    Stanley MSM, Grundmann AW. The embryonic development of Tribolium confusum. Ann Entomol Soc Amer. 1970;63:1248–56.

    Article  Google Scholar 

  27. 27.

    Tanaka M, Kobayashi Y, Ando H. Embryonic development of the nervous system and other ectodermal derivatives in the primitive moth, Endoclita sinensis (Lepidoptera, Hepialidae). In: Ando H, Miya K, editors. Recent Advances in Insect Embryology in Japan. Tsukuba: Isebu Co Ltd.; 1985. p. 215–29.

    Google Scholar 

  28. 28.

    Tsutsumi K, Machida R. Embryonic development of a snakefly, Inocellia japonica Okamoto: an outline (Insecta: Neuroptera, Raphidiodea). Proc Arthropod Embryol Soc Jpn. 2006;41:37–45.

    Google Scholar 

  29. 29.

    Uchifune T, Machida R. Embryonic development of Galloisiana yuasai Asahina, with special reference to external morphology (insecta: Grylloblattodea). J Morphol. 2005;266:182–207.

    PubMed  Article  PubMed Central  Google Scholar 

  30. 30.

    Slifer EH. The origin and fate of the membranes surrounding the grasshopper egg; together with some experiments on the source of the hatching enzyme. Q J Micr Sci. 1937;79:493–506.

    Google Scholar 

  31. 31.

    Slifer EH. A cytological study of the pleuropodia of Melanoplus differentialis (Orthoptera, Acrididae) which furnishes new evidence that they produce the hatching enzyme. J Morphol. 1938;63:181–206.

    Article  Google Scholar 

  32. 32.

    Goltsev Y, Rezende GL, Vranizan K, Lanzaro G, Valle D, Levine M. Developmental and evolutionary basis for drought tolerance of the Anopheles gambiae embryo. Dev Biol. 2009;330:462–70.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  33. 33.

    Jacobs CGC, Braak N, Lamers GEM, van der Zee M. Elucidation of the serosal cuticle machinery in the beetle Tribolium by RNA sequencing and functional analysis of Knickkopf1, Retroactive and Laccase2. Insect Biochem Mol Biol. 2015;60:7–12.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  34. 34.

    Reynolds SE, Samuels R. Physiology and biochemistry of insect moulting fluid. Adv In Insect Phys. 1996;26:157–232.

    CAS  Article  Google Scholar 

  35. 35.

    Bullière F. L’évolution des pleuropodes au cours du développement embryonnaire de la Blabera craniifer (Insecte Dictyoptère). Arch Anat Microsc. 1970;59:201–20.

    Google Scholar 

  36. 36.

    Louvet JP. L’ultrastructure du pleuropode et son ontogenèse, chez l’embryon du phasme Carausius morosus Br. I. – Étude du pleuropode de l’embryon agé. Ann Sci Nat Zool. 1973;12:525–94.

    Google Scholar 

  37. 37.

    Louvet JP. Premières observations sur l’ultrastructure du pleuropode chez le Criquet migrateur. C R Acad Sci Paris D. 1975;280:1301–4.

    Google Scholar 

  38. 38.

    Stay B. Fine structure of two types of pleuropodia in Diploptera punctata (Dictyoptera: Blaberiadae) with observations on their permeability. Int J Insect Morphol Embryol. 1977;6:67–95.

    Article  Google Scholar 

  39. 39.

    Viscuso R, Sottile L. Fine structure of pleuropodia in three species of Insecta Orthoptera during embryonic development. Ital J Zool (Modena). 2008;75:11–9.

    Article  Google Scholar 

  40. 40.

    Locke M, Krishnan N. The formation of the ecdysial droplets and the ecdysial membrane in an insect. Tissue Cell. 1973;5:441–50.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  41. 41.

    Jones B. Endocrine activity during insect embryogenesis. Control of events in development following the embryonic moult (Locusta migratoria and Locustana pardalina, Orthoptera). J Exp Biol. 1956;33:685–96.

    CAS  Google Scholar 

  42. 42.

    Shutts JH. Some characteristics of the hatching enzyme in the eggs of Melanoplus differentialis (Thomas). Proc S Dak Acad Sci. 1952;31:158–63.

    CAS  Google Scholar 

  43. 43.

    Novak VJA, Zambre SK. To the problem of structure and function of pleuropodia in Schistocerca gregaria FORSKÅL embryos. Zool Jb Physiol. 1974;78:344–55.

    Google Scholar 

  44. 44.

    Panfilio KA. Extraembryonic development in insects and the acrobatics of blastokinesis. Dev Biol. 2008;313:471–91.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  45. 45.

    Grellet P. Variations du volume et teneur en AND des noyaux de Scapsipedus marginatus Afz. et Br. (Orthoptère, Gryllidae) au cours de l’embryogenèse. Wilhelm Roux Arch Entwickl Mech Mech Org. 1971;167:243–65.

    Article  Google Scholar 

  46. 46.

    Bernays EA. The vermiform larva of Schistocerca gregaria (Forskål): form and activity (Insecta, Orthoptera). Z Morph Tiere. 1971;70:183–200.

    Google Scholar 

  47. 47.

    Konopova B, Zrzavy J. Ultrastructure, development, and homology of insect embryonic cuticles. J Morphol. 2005;264:339–62.

    PubMed  Article  PubMed Central  Google Scholar 

  48. 48.

    Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015;31:3210–2.

    PubMed  Article  CAS  PubMed Central  Google Scholar 

  49. 49.

    Waterhouse RM, Seppey M, Simão FA, Manni M, Ioannidis P, Klioutchnikov G, Kriventseva EV, Zdobnov EM. BUSCO applications from quality assessments to gene prediction and phylogenomics. Mol Biol Evol. 2018;35:543–8.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  50. 50.

    Angelini DR, Liu PZ, Hughes CL, Kaufman TC. Hox gene function and interaction in the milkweed bug Oncopeltus fasciatus (Hemiptera). Dev Biol. 2005;287:440–55.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  51. 51.

    Hughes CL, Kaufman TC. Hox genes and the evolution of the arthropod body plan. Evol Dev. 2002;4:459–99.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  52. 52.

    Prpic NM, Wigand B, Damen WG, Klingler M. Expression of dachshund in wild-type and Distal-less mutant Tribolium corroborates serial homologies in insect appendages. Dev Genes Evol. 2001;211:467–77.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  53. 53.

    Tear G, Akam M, Martinez-Arias A. Isolation of an abdominal-A gene from the locust Schistocerca gregaria and its expression during early embryogenesis. Development. 1990;110:915–25.

    CAS  PubMed  PubMed Central  Google Scholar 

  54. 54.

    Zhang H, Shinmyo Y, Mito T, Miyawaki K, Sarashina I, Ohuchi H, Noji S. Expression patterns of the homeotic genes Scr, Antp, Ubx, and abd-A during embryogenesis of the cricket Gryllus bimaculatus. Gene Expr Patterns. 2005;5:491–502.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  55. 55.

    Zhang J, Lu A, Kong L, Zhang Q, Ling E. Functional analysis of insect molting fluid proteins on the protection and regulation of ecdysis. J Biol Chem. 2014;289:35891–35,906.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  56. 56.

    Zhu KY, Merzendorfer H, Zhang W, Zhang J, Muthukrishnan S. Biosynthesis, Turnover, and Functions of Chitin in Insects. Annu Rev. Entomol. 2016;61:177–96.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  57. 57.

    Fukamizo T, Kramer KJ. Mechanism of chitin oligosaccharide hydrolysis by the binary enzyme chitinase system in insect moulting fluid. Insect Biochem. 1985;15:1–7.

    CAS  Article  Google Scholar 

  58. 58.

    Hogenkamp DG, Arakane Y, Kramer KJ, Muthukrishnan S, Beeman RW. Characterisation and expression of β-N-acetylhexosaminidase gene family of Tribolium castaneum. Insect Biochem Mol Biol. 2008;38:478–89.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  59. 59.

    Rong S, Li DQ, Zhang XY, Li S, Zhu KY, Guo YP, Ma EB, Zhang JZ. RNA interference to reveal roles of β-N-acetylglucosaminidase gene during molting process in Locusta migratoria. Insect Sci. 2013;20:109–19.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  60. 60.

    Noh MY, Muthukrishnan S, Kramer KJ, Arakane Y. A chitinase with two catalytic domains is required for organization of the cuticular extracellular matrix of a beetle. PLoS Genet. 2018;14:e1007307.

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  61. 61.

    Qu M, Ma L, Chen P, Yang Q. Proteomic analysis of insect molting fluid with a focus on enzymes involved in chitin degradation. J Proteome Res. 2014;13:2931–40.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  62. 62.

    Zhu Q, Arakane Y, Beeman RW, Kramer KJ, Muthukrishnan S. Functional specialization among insect chitinase family genes revealed by RNA interference. Proc Natl Acad Sci USA. 2008;105:6650–5.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  63. 63.

    Broz V, Kucerova L, Rouhova L, Fleischmannova J, Strnad H, Bryant PJ, Zurovec M. Drosophila imaginal disc growth factor 2 is a trophic factor involved in energy balance, detoxification, and innate immunity. Sci Rep. 2017;7:43273.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  64. 64.

    Pesch YY, Riedel D, Patil KR, Loch G, Behr M. Chitinases and Imaginal disc growth factors organize the extracellular matrix formation at barrier tissues in insects. Sci Rep. 2016;6:18340.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  65. 65.

    Shi L, Paskewitz SM. Identification and molecular characterization of two immune- responsive chitinase-like proteins from Anopheles gambiae. Insect Mol Biol. 2004;13:387–98.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  66. 66.

    Yan J, Cheng Q, Narashimhan S, Li CB, Aksoy S. Cloning and functional expression of a fat body-specific chitinase cDNA from the tsetse fly, Glossina morsitans morsitans. Insect Biochem Mol Biol. 2002;32:979–89.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  67. 67.

    Li D, Zhang J, Wang Y, Liu X, Ma E, Sun Y, Li S, Zhu KY, Zhang J. Two chitinase 5 genes from Locusta migratoria: molecular characteristics and functional differentiation. Insect Biochem Mol Biol. 2015;58:46–54.

    PubMed  Article  CAS  PubMed Central  Google Scholar 

  68. 68.

    Liu HW, Wang LL, Tang X, Dong ZM, Guo PC, Zhao DC, Xia QY, Zhao P. 2018. Proteomic analysis of Bombyx mori molting fluid: Insights into the molting process. J Proteomics. 2018;173:115–25.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  69. 69.

    Sui Y-P, Liu X-B, Chai L-Q, Wang J-X, Zhao X-F. Characterization and influences of classical insect hormones on the expression profiles of a molting carboxypeptidase A from the cotton bollworm (Helicoverpa armigera). Insect Mol Biol. 2009;18:353–63.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  70. 70.

    Wei Z, Yin Y, Zhang B, Wang Z, Peng G, Cao Y, Xia Y. Cloning of a novel protease required for the molting of Locusta migratoria manilensis. Dev Growth Differ. 2007;49:611–21.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  71. 71.

    Buchon N, Silverman N, Cherry S. Immunity in Drosophila melanogaster – from microbial recognition to whole-organism physiology. Nat Rev. Immunol. 2014;14:796–810.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  72. 72.

    Lemaitre B, Hoffmann J. The host defense of Drosophila melanogaster. Annu Rev. Immunol. 2007;25:697–743.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  73. 73.

    Bergman P, Seyedoleslami Esfahani S, Engström Y. Drosophila as a Model for Human Diseases-Focus on Innate Immunity in Barrier Epithelia. Curr Top Dev Biol. 2017;121:29–81.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  74. 74.

    Mohamed AA, Zhang L, Dorrah MA, Elmogy M, Yousef HA, Bassal TT, Duvic B. Molecular characterization of a c-type lysozyme from the desert locust, Schistocerca gregaria (Orthoptera: Acrididae). Dev Comp Immunol. 2016;61:60–9.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  75. 75.

    Hentze JL, Moeller ME, Jørgensen AF, Bengtsson MS, Bordoy AM, Warren JT, Gilbert LI, Andersen O, Rewitz KF. Accessory gland as a site for prothoracicotropic hormone controlled ecdysone synthesis in adult male insects. PLoS One. 2013;8(2):e55131.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  76. 76.

    Niwa R, Niwa YS. Enzymes for ecdysteroid biosynthesis: their biological functions in insects and beyond. Biosci Biotechnol Biochem. 2014;78:1283–92.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  77. 77.

    Ou Q, Zeng J, Yamanaka N, Brakken-Thal C, O’Connor MB, King-Jones K. The Insect Prothoracic Gland as a Model for Steroid Hormone Biosynthesis and Regulation. Cell Rep. 2016;16:247–62.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  78. 78.

    Lenaerts C, Van Wielendaele P, Peeters P, Vanden Broeck J, Marchal E. Ecdysteroid signalling components in metamorphosis and development of the desert locust, Schistocerca gregaria. Insect Biochem Mol Biol. 2016;75:10–23.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  79. 79.

    Marchal E, Badisco L, Verlinden H, Vandersmissen T, Van Soest S, Van Wielendaele P, Vanden BJ. Role of the Halloween genes, Spook and Phantom in ecdysteroidogenesis in the desert locust. Schistocerca gregaria. J Insect Physiol. 2011;57:1240–8.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  80. 80.

    Marchal E, Verlinden H, Badisco L, Van Wielendaele P, Vanden BJ. RNAi-mediated knockdown of Shade negatively affects ecdysone-20-hydroxylation in the desert locust. Schistocerca gregaria. J Insect Physiol. 2012;58:890–6.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  81. 81.

    Sugahara R, Tanaka S, Shiotsuki T. RNAi-mediated knockdown of SPOOK reduces ecdysteroid titers and causes precocious metamorphosis in the desert locust Schistocerca gregaria. Dev Biol. 2017;429:71–80.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  82. 82.

    Chávez VM, Marqués G, Delbecque JP, Kobayashi K, Hollingsworth M, Burr J, Natzle JE, O’Connor MB. The Drosophila disembodied gene controls late embryonic morphogenesis and codes for a cytochrome P450 enzyme that regulates embryonic ecdysone levels. Development. 2000;127:4115–26.

    PubMed  PubMed Central  Google Scholar 

  83. 83.

    Niwa R, Matsuda T, Yoshiyama T, Namiki T, Mita K, Fujimoto Y, Kataoka H. CYP306A1, a cytochrome P450 enzyme, is essential for ecdysteroid biosynthesis in the prothoracic glands of Bombyx and Drosophila. J Biol Chem. 2004;279:35942–35,949.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  84. 84.

    Petryk A, Warren JT, Marqués G, Jarcho MP, Gilbert LI, Kahler J, Parvy JP, Li Y, Dauphin-Villemant C, O’Connor MB. Shade is the Drosophila P450 enzyme that mediates the hydroxylation of ecdysone to the steroid insect molting hormone 20-hydroxyecdysone. Proc Natl Acad Sci USA. 2003;100:13773–13,778.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  85. 85.

    Warren JT, Petryk A, Marques G, Jarcho M, Parvy JP, Dauphin-Villemant C, O’Connor MB, Gilbert LI. Molecular and biochemical characterization of two P450 enzymes in the ecdysteroidogenic pathway of Drosophila melanogaster. Proc Natl Acad Sci USA. 2002;99:11043–8.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  86. 86.

    Warren JT, Petryk A, Marqués G, Parvy JP, Shinoda T, Itoyama K, Kobayashi J, Jarcho M, Li Y, O’Connor MB, Dauphin-Villemant C, Gilbert LI. Phantom encodes the 25-hydroxylase of Drosophila melanogaster and Bombyx mori: a P450 enzyme critical in ecdysone biosynthesis. Insect Biochem Mol Biol. 2004;34:991–1010.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  87. 87.

    Huang X, Warren JT, Buchanan J, Gilbert LI, Scott MP. Drosophila Niemann-Pick type C-2 genes control sterol homeostasis and steroid biosynthesis: a model of human neurodegenerative disease. Development. 2007;134:3733–42.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  88. 88.

    Xi Y, Pan PL, Ye YX, Yu B, Xu HJ, Zhang CX. Chitinase-like gene family in the brown planthopper, Nilaparvata lugens. Insect Mol Biol. 2015;24:29–40.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  89. 89.

    Zhang T, Liu W, Li D, Gao L, Ma E, Zhu KY, Moussian B, Li S, Zhang J. LmCht5–1 promotes pro-nymphal molting during locust embryonic development. Insect Biochem Mol Biol. 2018;101:124–30.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  90. 90.

    Tanizawa T, Ando H, Tojo K. Notes on the pleuropodia in the giant water bug Appasus japonicus (Heteroptera, Belostomatidae). Proc Arthropod Embryol Soc Jpn. 2007;42:9–11.

    Google Scholar 

  91. 91.

    Berridge MJ, Oschman JL. Transporting epithelia. New York: Academic Press; 1972.

    Google Scholar 

  92. 92.

    Jacobs CG, Spaink HP, van der Zee M. The extraembryonic serosa is a frontier epithelium providing the insect egg with a full-range innate immune response. eLife. 2014;3:e04111.

    PubMed Central  Article  Google Scholar 

  93. 93.

    Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29:644–52.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  94. 94.

    Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics. 2003;19:651–2.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  95. 95.

    Cox MP, Peterson DA, Biggs PJ. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics. 2010;11:485.

    PubMed  PubMed Central  Article  Google Scholar 

  96. 96.

    Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008;18:821–9.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  97. 97.

    Schulz MH, Zerbino DR, Vingron M, Birney E. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics. 2012;28:1086–92.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  98. 98.

    Deng W, Nickle DC, Learn GH, Maust B, Mullins JI. ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user’s datasets. Bioinformatics. 2007;23:2334–6.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  99. 99.

    R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3–900,051–07-0; 2008.

  100. 100.

    Pagès H, Aboyoun P, Gentleman R and DebRoy S. Biostrings: Efficient manipulation of biological strings. R package version 2.46.0.; 2017.

  101. 101.

    Käll L, Krogh A, Sonnhammer ELL. Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server. Nucleic Acids Res. 2007;35:W429–32.

    PubMed  PubMed Central  Article  Google Scholar 

  102. 102.

    Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013;8:1494–512.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  103. 103.

    Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25.

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  104. 104.

    Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550.

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  105. 105.

    Rau A, Gallopin M, Celeux G, Jaffrezic F. Data-based filtering for replicated high-throughput transcriptome sequencing experiments. Bioinformatics. 2013;29:2146–52.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  106. 106.

    Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A. Differential expression in RNA-seq: a matter of depth. Genome Res. 2011;21:2213–23.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  107. 107.

    Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5:621–8.

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  108. 108.

    Young MD, Wakefield MJ, Smyth GK, Oshlack A. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 2010;11:R14.

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  109. 109.

    Supek F, Bošnjak M, Škunca N, Šmuc T. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms. PLoS ONE. 2011;6:e21800.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  110. 110.

    Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JMA. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research. 2007;35:W71–4.

    PubMed  PubMed Central  Article  Google Scholar 

Download references

Acknowledgements

Majority of the work was carried out in the lab of Michael Akam (University of Cambridge) and the data analysis was finished in the lab of Gregor Bucher (University of Göttingen); BK thanks both for hosting and financial support. Electron microscopy was done at the Cambridge Advanced Imaging Centre (University of Cambridge). Immunolabeling was done in the lab and with help of Andrew Gillis. Stereomicroscopic pictures were taken in the lab of Paul Brakefield. For RNA-seq we used the services of BGI (Hong Kong) and the Eastern Sequence and Informatics Hub, Cambridge (UK). We also thank for help and advice to Ken Siggens, Jenny Barna, Jeremy Skepper and lab, Steven Van Belleghem, Barry Denholm, Jan Šobotník, and Gareth Griffiths, for scripts to Erik Clark and Simon Martin. We thank to Michael Akam, Siegfried Roth, Stuart Reynolds, Nico Posnien and Maurijn van der Zee for comments on the manuscript.

Funding

This work was supported by Human Frontier Science Program (Long-Term postdoctoral fellowship LT000733/2009-L), Biotechnology and Biological Sciences Research Council (grant number grant BB/ K009133/1), Isaac Newton Trust (University of Cambridge) and Balfour-Browne Fund (University of Cambridge).

Author information

Affiliations

Authors

Contributions

BK initiated the study, designed research, carried out all experimental work, supervised the bioinformatics analysis, interpreted the data and wrote the paper; EB performed majority of the bioinformatics analysis and edited the draft; AC carried out the initial steps in the selections of transcripts for the reference transcriptome and did a preliminary expression analysis. All authors read and approved the manuscript.

Corresponding author

Correspondence to Barbora Konopová.

Ethics declarations

Ethics approval and consent to participate

Not applicable.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Additional file 1: Figure S1.

S. gregaria embryonic stages used in this study. Figure S2. External features of developing hind legs and pleuropodia. Figure S3. Cross-sections through developing hind legs and pleuropodia. Figure S4. Ultrastructure of epidermal cells in developing hind legs. Figure S5. Amino acid sequences and conserved domains of S. gregaria chitin degrading enzymes. Figure S6. Phylogenetic trees of chitin degrading enzymes in S. gregaria and other insects. Figure S7. Real-time RT-PCR expression analysis of Sg-cht7–1 and Sg-cht10–1 on cDNA from parts of S. gregaria embryos.

Additional file 2: Table S1.

Embryonic transcriptome of S. gregaria: numbers of sequenced reads and assembled transcripts. Table S2. RNA-seq expression analysis: numbers of sequenced and mapped reads. Table S3. Number of differentially expressed genes at selected levels of stringency. Table S4. Differential expression of genes, whose expression dynamics in the early stages of pleuropodia development is known. Table S5. Comparison between differential expression of selected genes obtained by RNA-seq and real-time RT-PCR. Table S6. GOs enriched in the downregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S7. GOs enriched in the upregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S8. GOs enriched in the downregulated DEGs from each developmental stage . Table S9. GOs enriched in the upregulated DEGs from each developmental stage. Table S10. Genes for core transporters expressed in the pleuropodia. Table S11. S. gregaria genes for proteins with GO “proteolysis” that were upregulated in the highly secreting pleuropodia. Table S12. Differential gene expression of S. gregaria homologs (or close relatives) of known genes for MF proteases in the highly secreting pleuropodia. Table S13. Immunity-related proteins expressed in the highly secreting pleuropodia. Table S14. Genes for lysozymes identified in the S. gregaria embryonic transcriptome. Table S15. Genes for ecdysone biosynthesis enzymes identified in the S. gregaria embryonic transcriptome. Table S16. RNA-seq differential gene expression of S. gregaria ecdysone biosynthesis enzymes in the pleuropodia at diverse stages. Table S17. S. gregaria genes with GO terms “hormone biosynthetic process” upregulated in the highly secreting pleuropodia. Table S18. Sequences of primers.

Rights and permissions

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Reprints and Permissions

About this article

Verify currency and authenticity via CrossMark

Cite this article

Konopová, B., Buchberger, E. & Crisp, A. Transcriptome of pleuropodia from locust embryos supports that these organs produce enzymes enabling the larva to hatch. Front Zool 17, 4 (2020). https://doi.org/10.1186/s12983-019-0349-2

Download citation

Keywords

  • Appendage
  • Cuticle
  • Ecdysone
  • Embryo
  • Gland
  • Immunity
  • Moulting fluid
  • Orthoptera
  • RNA-seq
  • Schistocerca gregaria