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Table 2 Differentially expressed genes (DEGs) identified in each tissue

From: Mitonuclear mismatch alters nuclear gene expression in naturally introgressed Rhinolophus bats

DEGs

Log2CPM

Log2FC

p-adj

Gene description

Pectoral muscle

    

DNASE1L3

1.42

6.63

8.90E−04

Deoxyribonuclease 1 like 3

CLNK

0.20

5.85

7.96E−03

Cytokine dependent hematopoietic cell linker

ACTC1

5.35

5.41

5.00E−03

Actin alpha cardiac muscle 1

TNNT2

0.58

5.40

2.39E−03

Troponin T2, cardiac type

CXCL10

1.89

4.92

2.47E−06

C-X-C motif chemokine ligand 10

SLAMF6

0.90

4.32

2.18 E−02

SLAM family member 6

IL21R

1.72

4.19

2.71E−02

Interleukin 21 receptor

VPREB3

1.09

3.97

2.58E−02

V-set pre-B cell surrogate light chain 3

CD3G

1.76

3.88

1.44E−03

CD3g molecule

XCL1

1.27

3.87

1.97E−03

X-C motif chemokine ligand 1

CD7

2.06

3.50

1.70E−03

CD7 molecule

WDFY4

3.50

3.41

2.12E−05

WDFY family member 4

IRF8

2.83

3.41

1.95E−03

Interferon regulatory factor 8

CPVL

3.52

3.37

1.44E−03

Carboxypeptidase vitellogenic like

MYL4

2.80

3.32

3.52E−03

Myosin light chain 4

RYR3

2.68

3.22

9.62E−03

Ryanodine receptor 3

LCK

3.16

3.07

1.32E−02

LCK proto-oncogene, Src family tyrosine kinase

PRUNE2

0.97

3.00

4.15E−02

Prune homolog 2 with BCH domain

XIRP2

7.30

2.90

2.96E−02

xin actin binding repeat containing 2

CD3E

2.67

2.87

4.46E−02

CD3e molecule

IL2RB

2.27

2.82

5.73E−03

interleukin 2 receptor subunit beta

LAT

1.52

2.76

2.71E−02

Linker for activation of T cells

MPEG1

3.08

2.68

1.44E−03

Macrophage expressed 1

ITM2A

2.31

2.48

2.03E−02

Integral membrane protein 2A

CTSW

2.13

2.37

2.03E−02

Cathepsin W

CILP

3.51

2.20

1.44E−03

Cartilage intermediate layer protein

GPX3

5.21

2.02

8.05E−03

Glutathione peroxidase 3

CD74

7.86

1.92

5.70E−03

CD74 molecule

ARHGAP22

1.81

1.92

7.96E−03

Rho GTPase activating protein 22

SYNPO2

5.17

1.90

7.96E−03

Synaptopodin 2

HLA-DRA

6.85

1.81

2.06E−02

Major histocompatibility complex, class II, DR alpha

POSTN

2.44

1.76

1.16E−02

Periostin

PLIN1

5.38

1.69

4.16E−02

Perilipin 1

MFAP5

2.23

1.64

4.22E−02

Microfibril associated protein 5

COL1A2

4.44

1.47

4.22E−02

Collagen type I alpha 2 chain

MAP1A

3.59

1.39

8.05E−03

Microtubule associated protein 1A

HSPB6

7.15

1.27

7.96E−03

Heat shock protein family B (small) member 6

SLC16A5

5.94

− 1.11

2.96E−02

Solute carrier family 16 member 5

CATSPER2

2.06

− 1.54

2.71E−02

Cation channel sperm associated 2

CSF3R

3.68

− 2.39

5.73E−03

Colony stimulating factor 3 receptor

CYP4F2

3.20

− 2.69

1.21E−02

Cytochrome P450 family 4 subfamily F member 2

IL1B

3.72

− 2.82

7.96E−03

Interleukin 1 beta

CCL8

2.16

− 3.30

2.83E−03

C–C motif chemokine ligand 8

Heart

    

ISG15

3.31

1.69

2.67E−06

ISG15 ubiquitin like modifier

IFI6

5.41

1.64

3.03E−04

Interferon alpha inducible protein 6

Brain

    

CYP26A1

5.46

1.83

1.35E−05

Cytochrome P450 family 26 subfamily A member 1

CFHR3

0.56

− 5.08

1.35E−03

Complement factor H related 3

Liver

    

HLA-A

7.78

1.14

3.68E−02

HLA class I histocompatibility antigen, A alpha chain

SULT2A1

7.12

− 1.18

4.36E−05

Sulfotransferase family 2A member 1

ANKH

3.35

− 1.19

4.34E−03

ANKH inorganic pyrophosphate transport regulator

SPP1

5.18

− 1.87

3.99E−02

Secreted phosphoprotein 1

WFDC2

3.27

− 2.04

1.73E−02

WAP four-disulfide core domain 2

RGS4

0.72

− 2.57

3.73E−02

Regulator of G-protein signaling 4

TGM1

3.24

− 3.04

2.08E−07

Protein-glutamine gamma-glutamyltransferase K

Cochlea

    

SCTR

2.97

2.00

8.05E−04

Secretin receptor

SLC40A1

4.64

1.13

7.06E−03

Solute carrier family 40 member 1

MYOC

7.71

− 1.94

8.99E−03

Myocilin

Small intestine

    

CA3

3.63

3.13

8.11E−03

Carbonic anhydrase 3

NMRAL1

2.36

1.33

2.11E−02

NmrA-like family domain containing 1

PCDH8

3.36

− 2.32

1.38E−05

Protocadherin 8

  1. Positive and negative values indicate that genes are upregulated and downregulated in mismatched group, respectively. CPM and FC indicate counts per million and fold change, respectively
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Frontiers in Zoology

ISSN: 1742-9994