Table 3 Over-represented Gene Ontology terms based on the GO assignments in the wFleaBase. In total 87,517 annotations for 13,612 genes were available
From: Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex
Regulation | Ontologya | GO ID | Description | Numberb | GSNAP | TopHat |
|---|---|---|---|---|---|---|
UP | BP | GO:0006810 | Transport | 1425 | 18 | 17 |
UP | BP | GO:0006950 | Response to stress | 1028 | 14 | ns |
UP | CC | GO:0005576 | Extracellular region | 1024 | 15 | 14 |
UP | MF | GO:0005198 | Structural molecule activity | 439 | 9 | 9 |
UP | MF | GO:0005215 | Transporter activity | 717 | 13 | 14 |
UP | MF | GO:0016209 | Antioxidant activity | 121 | 7 | 8 |
UP | MF | GO:0019825 | Oxygen binding | 43 | 4 | 5 |
UP | MF | GO:0045735 | Nutrient reservoir activity | 8 | 4 | 4 |
DN | MF | GO:0030246 | Carbohydrate binding | 101 | 6 | 5 |