Table 2 Over-represented Gene Ontology terms based on the assignments from InterPro-annotations. In total 40,177 annotations for 14,503 genes were available
From: Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex
Regulation | Ontologya | GO ID | Description | Numberb | GSNAP | TopHat |
|---|---|---|---|---|---|---|
UP | BP | GO:0006801 | Superoxide metabolic process | 16 | ns | 3 |
UP | BP | GO:0006869 | Lipid transport | 27 | 6 | 6 |
UP | BP | GO:0015671 | Oxygen transport | 27 | 4 | 5 |
UP | BP | GO:0051726 | Regulation of cell cycle | 14 | ns | 3 |
UP | CC | GO:0005833 | Hemoglobin complex | 13 | ns | 4 |
UP | MF | GO:0005319 | Lipid transporter activity | 24 | 6 | 6 |
UP | MF | GO:0019825 | Oxygen binding | 27 | 4 | 5 |
UP | MF | GO:0042302 | Structural constituent of cuticle | 304 | 32 | 26 |
DN | CC | GO:0005581 | Collagen trimer | 58 | 4 | 4 |
DN | MF | GO:0005201 | Extracellular matrix structural constituent | 59 | 4 | 4 |
DN | MF | GO:0030246 | Carbohydrate binding | 110 | 5 | ns |