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Table 2 Over-represented Gene Ontology terms based on the assignments from InterPro-annotations. In total 40,177 annotations for 14,503 genes were available

From: Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex

Regulation Ontologya GO ID Description Numberb GSNAP TopHat
UP BP GO:0006801 Superoxide metabolic process 16 ns 3
UP BP GO:0006869 Lipid transport 27 6 6
UP BP GO:0015671 Oxygen transport 27 4 5
UP BP GO:0051726 Regulation of cell cycle 14 ns 3
UP CC GO:0005833 Hemoglobin complex 13 ns 4
UP MF GO:0005319 Lipid transporter activity 24 6 6
UP MF GO:0019825 Oxygen binding 27 4 5
UP MF GO:0042302 Structural constituent of cuticle 304 32 26
DN CC GO:0005581 Collagen trimer 58 4 4
DN MF GO:0005201 Extracellular matrix structural constituent 59 4 4
DN MF GO:0030246 Carbohydrate binding 110 5 ns
  1. ns — group not significantly over-represented
  2. aMF: Molecular Function, CC: Cellular Component, BP: Biological Process
  3. bTotal number of genes in the respective category