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Table 2 The characteristics of 66-sample RAD datasets produced under various Wclust and MinCov settings

From: Persistence of multiple patterns and intraspecific polymorphism in multi-species Müllerian communities of net-winged beetles

MinCov number/% 4/7% 8/12% 16/24% 33/50% 48/73% 60/91%
Wclust
 0.70 number of SNPs 407 127.3 24.4 2.56 0.54 0.05
number of sites 3299 900 164 19.3 4.15 0.44
number of loci 47.1 12.8 2.29 0.26 0.10 0.01
 0.75 number of SNPs 481 157.1 31.7 3.70 1.01 0.16
number of sites 3906 109.7 205 26.7 7.41 1.12
number of loci 55.8 15.6 2.87 0.36 0.10 0.02
 0.80 number of SNPs 565 194 40.7 4.97 1.45 0.25
number of sites 4748 1372 259 34.6 10.1 1.69
number of loci 67.8 19.54 3.64 0.48 0.14 0.02
 0.85 number of SNPs 650 240 54.6 6.27 2.09 0.55
number of sites 6066 1813 356 44.8 15.3 3.79
number of loci 86.7 25.9 5.0 0.63 0.23 0.05
 0.90 number of SNPs 622 241 59.3 7.57 2.60 0.69
number of sites 7548 2241 444 56.8 20.6 5.31
number of loci 108.0 32.1 6.33 0.80 0.29 0.08
  1. The numbers of SNPs, sites and loci are given in thousands