Table 2 The characteristics of 66-sample RAD datasets produced under various Wclust and MinCov settings
MinCov number/% | 4/7% | 8/12% | 16/24% | 33/50% | 48/73% | 60/91% | |
|---|---|---|---|---|---|---|---|
Wclust | |||||||
0.70 | number of SNPs | 407 | 127.3 | 24.4 | 2.56 | 0.54 | 0.05 |
number of sites | 3299 | 900 | 164 | 19.3 | 4.15 | 0.44 | |
number of loci | 47.1 | 12.8 | 2.29 | 0.26 | 0.10 | 0.01 | |
0.75 | number of SNPs | 481 | 157.1 | 31.7 | 3.70 | 1.01 | 0.16 |
number of sites | 3906 | 109.7 | 205 | 26.7 | 7.41 | 1.12 | |
number of loci | 55.8 | 15.6 | 2.87 | 0.36 | 0.10 | 0.02 | |
0.80 | number of SNPs | 565 | 194 | 40.7 | 4.97 | 1.45 | 0.25 |
number of sites | 4748 | 1372 | 259 | 34.6 | 10.1 | 1.69 | |
number of loci | 67.8 | 19.54 | 3.64 | 0.48 | 0.14 | 0.02 | |
0.85 | number of SNPs | 650 | 240 | 54.6 | 6.27 | 2.09 | 0.55 |
number of sites | 6066 | 1813 | 356 | 44.8 | 15.3 | 3.79 | |
number of loci | 86.7 | 25.9 | 5.0 | 0.63 | 0.23 | 0.05 | |
0.90 | number of SNPs | 622 | 241 | 59.3 | 7.57 | 2.60 | 0.69 |
number of sites | 7548 | 2241 | 444 | 56.8 | 20.6 | 5.31 | |
number of loci | 108.0 | 32.1 | 6.33 | 0.80 | 0.29 | 0.08 | |