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Table 2 Averaged bootstrap support [%] of selected clades

From: Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

Data set

Selected clades

Gb(none)

Gb(half)

Gb(all)

Al

Unm

mtI

      
 

Plant

63.8

82.0

77.5

81.5

97.0

 

Viridiplantae

99.8

99.5

99.8

100.0

100.0

 

Streptophyta

100.0

100.0

100.0

100.0

100.0

 

(Rhodophyta, Plant)

68.5

92.0

88.5

82.8

96.8

 

Fungi

100.0

100.0

100.0

100.0

100.0

 

(Ascomycota, Blastocladiomycota)

100.0

100.0

100.0

100.0

100.0

 

Metazoa

100.0

99.5

99.3

100.0

85.8

 

Bilateria

93.3

100.0

100.0

100.0

100.0

 

Gastroneuralia

100.0

100.0

100.0

100.0

100.0

 

Deuterostomia

73.0

99.8

100.0

99.8

100.0

 

(Fungi, Metazoa)

100.0

62.5

75.0

76.0

0.0

 

((Fungi, Metazoa), Amoebozoa)

41.3

17.3

46.3

24.0

0.0

mtII

      
 

Plant

0.0

0.0

0.0

0.0

0.0

 

Viridiplantae

0.0

0.0

0.0

0.0

0.0

 

Streptophyta

100.0

100.0

100.0

100.0

100.0

 

Chlorophyta

0.0

0.0

0.0

0.0

0.0

 

Rhodophyta

99.5

93.5

98.5

97.5

97.8

 

(Rhodophyta, Plant)

0.0

0.0

0.0

0.0

0.0

 

Amoebozoa

0.0

0.0

0.0

0.0

14.3

 

Fungi

100.0

100.0

100.0

100.0

93.3

 

(Ascomycota, Blastocladiomycota)

100.0

100.0

100.0

100.0

96.2

 

Metazoa

100.0

100.0

100.0

100.0

100.0

 

Bilateria

100.0

100.0

100.0

100.0

100.0

 

Gastroneuralia

98.5

100.0

100.0

100.0

88.5

 

Deuterostomia

69.3

94.5

98.8

95.5

73.3

 

(Fungi, Metazoa)

87.3

70.5

64.8

79.3

67.5

 

((Fungi, Metazoa), Amoebozoa)

0.0

0.0

0.0

0.0

0.0

EST

      
 

Chelicerata

0.0

50.8

57.5

24.8

0.0

 

Pancrustacea

97.8

99.5

100.0

100.0

0.0

 

(Cirripedia, Malacostraca)

56.0

58.5

79.5

85.0

0.0

 

Hexapoda

0.0

46.5

66.8

52.8

0.0

 

Collembola

98.8

99.5

99.8

100.0

0.0

 

Nonoculata

18.8

74.5

72.8

84.3

0.0

 

Ectognatha

88.0

55.8

76.8

75.3

0.0

12S + 16S

      
 

Campodeidae

17.5

89.3

98.8

97.0

99.8

 

Diplura

0.0

87.8

96.8

92.5

94.3

 

Archaeognatha

0.0

59.8

85.3

75.8

47.5

 

Decapoda

0.0

38.5

38.0

81.8

73.3

 

Dictyoptera

0.0

38.0

39.3

45.3

49.5

 

Collembola

0.0

97.5

99.3

97.5

96.0

 

Odonata

57.8

100.0

100.0

99.3

100.0

 

Japygidae

29.8

99.5

99.0

100.0

100.0

 

Hymenoptera

0.0

88.0

84.3

83.8

24.8

  1. Averaged bootstrap support [%] of selected clades of each data set (mtI, mtII, EST, 12S + 16S) inferred from majority rule ML trees for all GBLOCKS profiles (Gb(none), Gb(half), Gb(all)), ALISCORE (Al), and Unmasked (Unm). Values are averaged across different alignment methods per masking approach.