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Table 2 Averaged bootstrap support [%] of selected clades

From: Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

Data set Selected clades Gb(none) Gb(half) Gb(all) Al Unm
mtI       
  Plant 63.8 82.0 77.5 81.5 97.0
  Viridiplantae 99.8 99.5 99.8 100.0 100.0
  Streptophyta 100.0 100.0 100.0 100.0 100.0
  (Rhodophyta, Plant) 68.5 92.0 88.5 82.8 96.8
  Fungi 100.0 100.0 100.0 100.0 100.0
  (Ascomycota, Blastocladiomycota) 100.0 100.0 100.0 100.0 100.0
  Metazoa 100.0 99.5 99.3 100.0 85.8
  Bilateria 93.3 100.0 100.0 100.0 100.0
  Gastroneuralia 100.0 100.0 100.0 100.0 100.0
  Deuterostomia 73.0 99.8 100.0 99.8 100.0
  (Fungi, Metazoa) 100.0 62.5 75.0 76.0 0.0
  ((Fungi, Metazoa), Amoebozoa) 41.3 17.3 46.3 24.0 0.0
mtII       
  Plant 0.0 0.0 0.0 0.0 0.0
  Viridiplantae 0.0 0.0 0.0 0.0 0.0
  Streptophyta 100.0 100.0 100.0 100.0 100.0
  Chlorophyta 0.0 0.0 0.0 0.0 0.0
  Rhodophyta 99.5 93.5 98.5 97.5 97.8
  (Rhodophyta, Plant) 0.0 0.0 0.0 0.0 0.0
  Amoebozoa 0.0 0.0 0.0 0.0 14.3
  Fungi 100.0 100.0 100.0 100.0 93.3
  (Ascomycota, Blastocladiomycota) 100.0 100.0 100.0 100.0 96.2
  Metazoa 100.0 100.0 100.0 100.0 100.0
  Bilateria 100.0 100.0 100.0 100.0 100.0
  Gastroneuralia 98.5 100.0 100.0 100.0 88.5
  Deuterostomia 69.3 94.5 98.8 95.5 73.3
  (Fungi, Metazoa) 87.3 70.5 64.8 79.3 67.5
  ((Fungi, Metazoa), Amoebozoa) 0.0 0.0 0.0 0.0 0.0
EST       
  Chelicerata 0.0 50.8 57.5 24.8 0.0
  Pancrustacea 97.8 99.5 100.0 100.0 0.0
  (Cirripedia, Malacostraca) 56.0 58.5 79.5 85.0 0.0
  Hexapoda 0.0 46.5 66.8 52.8 0.0
  Collembola 98.8 99.5 99.8 100.0 0.0
  Nonoculata 18.8 74.5 72.8 84.3 0.0
  Ectognatha 88.0 55.8 76.8 75.3 0.0
12S + 16S       
  Campodeidae 17.5 89.3 98.8 97.0 99.8
  Diplura 0.0 87.8 96.8 92.5 94.3
  Archaeognatha 0.0 59.8 85.3 75.8 47.5
  Decapoda 0.0 38.5 38.0 81.8 73.3
  Dictyoptera 0.0 38.0 39.3 45.3 49.5
  Collembola 0.0 97.5 99.3 97.5 96.0
  Odonata 57.8 100.0 100.0 99.3 100.0
  Japygidae 29.8 99.5 99.0 100.0 100.0
  Hymenoptera 0.0 88.0 84.3 83.8 24.8
  1. Averaged bootstrap support [%] of selected clades of each data set (mtI, mtII, EST, 12S + 16S) inferred from majority rule ML trees for all GBLOCKS profiles (Gb(none), Gb(half), Gb(all)), ALISCORE (Al), and Unmasked (Unm). Values are averaged across different alignment methods per masking approach.
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Frontiers in Zoology

ISSN: 1742-9994