Table 1 Summary statistics for the cell- and nuclei dataset
Dataset | scRNAseq | snRNAseq |
|---|---|---|
Estimated number of cells (# of discs) | 14,487 (28) | 9048 (41) |
Number of cells per disc (% of expected number of cellsa) | 517 (1.1) | 221 (0.5) |
Median genes per cell | 537 | 812 |
Mean reads per cell | 13,303 | 13,334 |
Valid barcodes | 96.10% | 97.10% |
Number of reads | 192,731,871 | 120,649,741 |
Fraction of reads in cells | 38.20% | 73.50% |
Total genes detected | 11,062 | 12,296 |
Median UMI counts per cell | 1249 | 1383 |
Reads mapped to genome | 93.20% | 85.70% |
Reads mapped confidently to genome | 86.40% | 84.50% |
Reads mapped confidently to intronic regions | 2.10% | 14.70% |
Reads mapped confidently to intergenic regions | 9.00% | 0.80% |
Reads mapped confidently to exonic regions | 75.20% | 69.00% |
Percentage of cells with high mitochondrial read count (> 10%) | 14.00% | 0.02% |