Table 1 A summary of the Illumina HiSeq sequencing and assembly of L. mandarinus and L. brandtii. N50: The N50 length is used to determine the assembly continuity, the higher the better. N50 is a weighted median statistic that 50% of the total length is contained in transcripts that are equal to or larger than this value. GC (%): the percentage of G and C bases in all Unigenes
| Â | L. mandarinus | L. brandtii |
|---|---|---|
Reads length (bp) | PE; 125 bp | PE; 125 bp |
Total number of raw reads | 196,066,964 | 202,476,460 |
Total number of clean reads | 177,508,410 | 184,167,383 |
Total Number of Transcripts | 137,697 | 132,622 |
Total Number of Unigenes | 80,978 | 83,444 |
N50 (All) | 3097 | 3362 |
Median contig length (bp) | 652 | 630 |
Average contig length (bp) | 1470.19 | 1524.68 |
Assembly (bp) | 202,440,402 | 202,206,577 |
N50 of Unigenes | 2351 | 2410 |
Median contig length of Unigenes (bp) | 403 | 408 |
Average contig length of Unigenes (bp) | 986.63 | 1000.63 |
Assembly of Unigenes (bp) | 79,895,482 | 83,496,653 |
GC (%) | 49.13 | 49.28 |