Table 1 Transcriptome completeness inferred from Benchmarking Universal Single-Copy Orthologs (BUSCO) search. ALL, JL, YN, and HN represent de novo references used to obtain expression profiles, single nucleotide polymorphisms (SNPs), and the reference transcriptome for each separate population. The number and percentage represent the number of genes inferred from BUSCO and their percentage of all 6253 single-copy Laurasiatherian orthologs
BUSCO statistic | ALL | JL | YN | HN |
|---|---|---|---|---|
Complete BUSCOs | 5252 (84.0%) | 4880 (78.0%) | 5067 (81.0%) | 5159 (82.5%) |
Complete - single-copy BUSCOs | 5170 (82.7%) | 4734 (75.7%) | 4996 (79.9%) | 5027 (80.4%) |
Complete – duplicated BUSCOs | 82 (1.3%) | 146 (2.3%) | 71 (1.1%) | 132 (2.1%) |
Fragmented BUSCOs | 416 (6.7%) | 647 (10.3%) | 489 (7.8%) | 427 (6.8%) |
Missing BUSCOs | 585 (9.3%) | 726 (11.7%) | 697 (11.2%) | 667 (10.7%) |