From: Evolution of beak morphology in the Ground Tit revealed by comparative transcriptomics
Pathways | Genes | Descriptions | TPM | NOISeq | RT-qPCR | |||
---|---|---|---|---|---|---|---|---|
P. humilis | P. major | Log2FC | P-adj | Log2FC | P | |||
Wnt | WNT5A | Protein Wnt-5a | 48.06 | 148.61 | −1.63 | 0.00E+00 | – | – |
PRICKLE1 | Prickle-like protein 1 | 14.86 | 55.20 | −1.89 | 2.75E-06 | −0.17 | 1.10E-01 | |
WIF1*† | Wnt inhibitory factor 1 | 7.28 | 57.05 | −2.97 | 8.87E-06 | −3.28 | 5.30E-06 | |
NFATC3 | Nuclear factor of activated T-cells, cytoplasmic 3 | 8.98 | 39.30 | −2.13 | 9.47E-05 | – | – | |
FZD4 | Frizzled-4 | 16.67 | 89.95 | −2.43 | 1.54E-04 | – | – | |
LEF1 | Lymphoid enhancer-binding factor 1 | 60.50 | 143.01 | −1.24 | 1.77E-04 | – | – | |
FRZB* | Secreted frizzled-related protein 3 | 71.32 | 150.58 | −1.08 | 3.47E-04 | −3.23 | 4.12E-05 | |
DAAM2 | Disheveled-associated activator of morphogenesis 2 | 2.48 | 15.04 | −2.60 | 3.47E-04 | – | – | |
CCND1 | G1/S-specific cyclin-D1 | 24.35 | 69.13 | −1.51 | 4.18E-04 | – | – | |
PRKACB | cAMP-dependent protein kinase catalytic subunit beta | 34.22 | 73.42 | −1.10 | 4.97E-04 | – | – | |
MAPK/FGF | FGF17 | Fibroblast growth factor 17 | 45.91 | 0.38 | 6.91 | 0.00E + 00 | 0.50 | 4.18E-01 |
FGF13*† | Fibroblast growth factor 13 | 11.33 | 3.71 | 1.61 | 4.21E-04 | 7.37 | 1.23E-08 | |
STK3 | Serine/threonine-protein kinase 38 | 11.70 | 40.72 | −1.80 | 4.64E-04 | – | – | |
OCD | NFATC1* | Nuclear factor of activated T-cells, cytoplasmic 1 | 5.82 | 39.32 | −2.76 | 1.60E-08 | −3.21 | 2.16E-05 |
ITGB3*† | Integrin beta-3 | 0.76 | 6.43 | −3.08 | 8.57E-05 | −5.49 | 1.21E-06 | |
Notch | HES5 | Transcription factor HES-5 | 117.76 | 17.23 | 2.77 | 3.11E-04 | 0.22 | 6.83E-01 |
Calcium | CACNA1G | Voltage-dependent T-type calcium channel subunit alpha-1G | 4.28 | 14.60 | −1.77 | 5.79E-04 | – | – |