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Table 2 SNP calling for mitochondrial genomes at ploidy =1

From: Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate

Site

BLM1

BLM2

BLM3

BLM4

BLM5

BLM6

7791 (atp8) (T/C)

10/8

0/29

17/22

2/72

79/39

24/3

8155 (atp6) (C/T)

29/0

0/34

17/0

50/0

121/2

15/0

15,572 (d-loop) (A/C)

14/41

0/30

6/46

8/65

88/100

29/4

  1. SNP calling was based on reads mapped onto reference mitochondrial genome obtained from BLM5. Values represent the coverage of two alternative states as shown in first column. Sites are considered polymorphic (highlighted in bold) if both states have at least 5x coverage