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Table 2 SNP calling for mitochondrial genomes at ploidy =1

From: Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate

Site BLM1 BLM2 BLM3 BLM4 BLM5 BLM6
7791 (atp8) (T/C) 10/8 0/29 17/22 2/72 79/39 24/3
8155 (atp6) (C/T) 29/0 0/34 17/0 50/0 121/2 15/0
15,572 (d-loop) (A/C) 14/41 0/30 6/46 8/65 88/100 29/4
  1. SNP calling was based on reads mapped onto reference mitochondrial genome obtained from BLM5. Values represent the coverage of two alternative states as shown in first column. Sites are considered polymorphic (highlighted in bold) if both states have at least 5x coverage