Table 1 Significantly over-represented InterPro domains and families among the differentially expressed genes. In total 46,928 annotations for 18,168 genes were available. The last two columns represent gene counts for significantly over-represented groups as revealed with the aid of the two mapping strategies
From: Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex
Regulation | Type | InterPro ID | Description | Numbera | GSNAP | TopHat |
|---|---|---|---|---|---|---|
UP | Domain | IPR001747 | Lipid transport protein, N-terminal | 22 | 6 | 6 |
UP | Domain | IPR001846 | von Willebrand factor, type D domain | 24 | 5 | 5 |
UP | Domain | IPR004367 | Cyclin, C-terminal domain | 11 | 3 | 3 |
UP | Domain | IPR009050 | Globin-like | 25 | 4 | 5 |
UP | Domain | IPR011030 | Vitellinogen, superhelical | 18 | 5 | 5 |
UP | Domain | IPR012292 | Globin, structural domain | 27 | 4 | 5 |
UP | Domain | IPR015255 | Vitellinogen, open beta-sheet | 12 | 5 | 5 |
UP | Domain | IPR015816 | Vitellinogen, beta-sheet N-terminal | 21 | 6 | 6 |
UP | Domain | IPR015819 | Lipid transport protein, beta-sheet shell | 20 | 6 | 6 |
UP | Family | IPR000618 | Insect cuticle protein | 304 | 32 | 26 |
UP | Family | IPR000971 | Globin | 23 | 4 | 5 |
UP | Family | IPR002336 | Erythrocruorin | 13 | ns | 4 |
UP | Family | IPR014400 | Cyclin A/B/D/E | 9 | 3 | 3 |
UP | Family | IPR022727 | Pupal cuticle protein C1 | 5 | 3 | 3 |
DN | Domain | IPR000885 | Fibrillar collagen, C-terminal | 56 | 4 | 4 |
DN | Domain | IPR001073 | Complement C1q protein | 172 | 7 | 7 |
DN | Domain | IPR001304 | C-type lectin | 68 | 5 | 4 |
DN | Domain | IPR002181 | Fibrinogen, α/β/γ chain, C-terminal globular domain | 50 | 4 | 4 |
DN | Domain | IPR008983 | Tumour necrosis factor-like domain | 180 | 7 | 7 |
DN | Domain | IPR014716 | Fibrinogen, α/β/γ chain, C-terminal globular, subdomain 1 | 45 | 4 | ns |
DN | Domain | IPR016186 | C-type lectin-like | 83 | 5 | ns |
DN | Domain | IPR016187 | C-type lectin fold | 86 | 5 | ns |
DN | Family | IPR002076 | GNS1/SUR4 membrane protein | 15 | 3 | 4 |