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Table 1 Significantly over-represented InterPro domains and families among the differentially expressed genes. In total 46,928 annotations for 18,168 genes were available. The last two columns represent gene counts for significantly over-represented groups as revealed with the aid of the two mapping strategies

From: Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex

Regulation Type InterPro ID Description Numbera GSNAP TopHat
UP Domain IPR001747 Lipid transport protein, N-terminal 22 6 6
UP Domain IPR001846 von Willebrand factor, type D domain 24 5 5
UP Domain IPR004367 Cyclin, C-terminal domain 11 3 3
UP Domain IPR009050 Globin-like 25 4 5
UP Domain IPR011030 Vitellinogen, superhelical 18 5 5
UP Domain IPR012292 Globin, structural domain 27 4 5
UP Domain IPR015255 Vitellinogen, open beta-sheet 12 5 5
UP Domain IPR015816 Vitellinogen, beta-sheet N-terminal 21 6 6
UP Domain IPR015819 Lipid transport protein, beta-sheet shell 20 6 6
UP Family IPR000618 Insect cuticle protein 304 32 26
UP Family IPR000971 Globin 23 4 5
UP Family IPR002336 Erythrocruorin 13 ns 4
UP Family IPR014400 Cyclin A/B/D/E 9 3 3
UP Family IPR022727 Pupal cuticle protein C1 5 3 3
DN Domain IPR000885 Fibrillar collagen, C-terminal 56 4 4
DN Domain IPR001073 Complement C1q protein 172 7 7
DN Domain IPR001304 C-type lectin 68 5 4
DN Domain IPR002181 Fibrinogen, α/β/γ chain, C-terminal globular domain 50 4 4
DN Domain IPR008983 Tumour necrosis factor-like domain 180 7 7
DN Domain IPR014716 Fibrinogen, α/β/γ chain, C-terminal globular, subdomain 1 45 4 ns
DN Domain IPR016186 C-type lectin-like 83 5 ns
DN Domain IPR016187 C-type lectin fold 86 5 ns
DN Family IPR002076 GNS1/SUR4 membrane protein 15 3 4
  1. ns — group not significantly over-represented
  2. aTotal number of genes in the respective category