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Table 1 Sequences (Trinity “components”) identified in the Illumina study and profiled using qPCR

From: Transcriptional profiling of reproductive development, lipid storage and molting throughout the last juvenile stage of the marine copepod Calanus finmarchicus

  

Illumina

qPCR

Name

Component, accession

Log FC

Log CPM

FDR

Log FC

Range FC

FABP

comp254629_c0 ES387222

−2.24

8.57

4.55E-09

−3.45

15.6

ELOV

comp267151_c1 ES387246

−4.72

9.31

4.36E-16

−4.74

30.0

HR78

comp265637_c0 KJ026941

−2.06

0.79

1.02E-04

−1.26

12.8

ERR

comp273411_c0 KJ026943

−2.17

4.89

1.14E-08

−1.84

5.3

HR3

comp264460_c0 KJ026938

3.21

4.48

2.59E-14

3.84

64.2

HR38a

comp270260_c0 KJ026939

2.65

3.63

8.58E-12

2.25

5.9

Vtg

comp274635_c1 KJ026944

3.20

8.14

3.45E-10

1.15

597.9

Torso-like

comp266966_c0 KJ026945

9.26

7.40

1.19e-84

8.24

1024.2

FTZ-F1

comp268775_c0 KJ026942

3.25

5.97

3.05E-16

4.25

32.0

HR38b

comp267178_c0 KJ026940

2.26

4.27

6.58E-10

1.07

7.8

EcR

comp263662_c0 EF583877

1.10

3.13

0.39

1.06

3.4

Fem1

comp269877_c0 KJ026947

4.43

7.08

1.67E-17

1.33

7.6

  1. Log2-transformed fold change (FC), log2-transformed counts per million (CPM), and false discovery rate (FDR) refer to the Illumina study comparing expression between 3 and 10 days after the penultimate molt. Log2-transformed average FC between days 3 and 10 also reported for the qPCR study, as well as the untransformed FC between the minimum and maximum qPCR expression values observed throughout the C5 copepodid stage. Log-transformed FC is reported as a positive number for genes exhibiting greater expression later in the molt cycle (day 10) and a negative number for genes exhibiting greater expression earlier in the molt cycle (day 3).
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Frontiers in Zoology

ISSN: 1742-9994