Models | lnL | Compared | 2ΔLnL | P-value | Parameter estimates |
---|---|---|---|---|---|
Branch model | Â | Â | Â | Â | Â |
M0:one-ratio | –7676.8782 |  |  |  | ω = 0.1342 |
M1:free-ratio | –7638.3982 | M0 vs. M1 | 76.9600 | p > 0.05 |  |
Site model | Â | Â | Â | Â | Â |
M1a | –7623.3051 |  |  |  | p0 = 0.8913, p1 = 0.1087, ω0 = 0.0632, ω1 = 1.0000 |
M2a | –7623.3051 | M1a vs. M2a | 0.0000 | p > 0.05 | p0 = 0.8913, p1 = 0.0609, p2 = 0.0478, ω0 = 0.0632, ω1 = 1.000, ω2 = 1.0000 |
M8a | –7619.6648 |  |  |  | p0 = 0.9461( p1 = 0.0539), p = 0.2391, q = 1.8178, ω = 1.0000 |
M8 | –7619.7175 | M8a vs. M8 | 0.1054 | p > 0.05 | p0 = 0.9678( p1 = 0.0322), p = 0.2634, q = 1.9053, ω = 1.1121 |
Branch-site model | Â | Â | Â | Â | |
Lineages of Macaca | Â | Â | Â | Â | |
Null | –7622.2362 |  |  |  | p0 = 0.8389, p1 = 0.1004 p2a = 0.0543, p2b = 0.0065 ω0 = 0.0619, ω1 = 1.000, ω2 = 1.0000 |
Alternative | –7620.4248 |  | 3.6228 | p < 0.05 | p0 = 0.8877, p1 = 0.1058 p2a = 0.0059, p2b = 0.0007 ω0 = 0.0621, ω1 = 1.000, ω2 = 21.4208 |