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Table 3 CODEML analyses of selective pattern on the TAS1R3 in catarrhine primates

From: Differentiated adaptive evolution, episodic relaxation of selective constraints, and pseudogenization of umami and sweet taste genes TAS1Rs in catarrhine primates

Models

lnL

Compared

2ΔLnL

P-value

Parameter estimates

Branch model

     

M0:one-ratio

–7676.8782

   

ω = 0.1342

M1:free-ratio

–7638.3982

M0 vs. M1

76.9600

p > 0.05

 

Site model

     

M1a

–7623.3051

   

p0 = 0.8913, p1 = 0.1087, ω0 = 0.0632, ω1 = 1.0000

M2a

–7623.3051

M1a vs. M2a

0.0000

p > 0.05

p0 = 0.8913, p1 = 0.0609, p2 = 0.0478, ω0 = 0.0632, ω1 = 1.000, ω2 = 1.0000

M8a

–7619.6648

   

p0 = 0.9461( p1 = 0.0539), p = 0.2391, q = 1.8178, ω = 1.0000

M8

–7619.7175

M8a vs. M8

0.1054

p > 0.05

p0 = 0.9678( p1 = 0.0322), p = 0.2634, q = 1.9053, ω = 1.1121

Branch-site model

    

Lineages of Macaca

    

Null

–7622.2362

   

p0 = 0.8389, p1 = 0.1004 p2a = 0.0543, p2b = 0.0065 ω0 = 0.0619, ω1 = 1.000, ω2 = 1.0000

Alternative

–7620.4248

 

3.6228

p < 0.05

p0 = 0.8877, p1 = 0.1058 p2a = 0.0059, p2b = 0.0007 ω0 = 0.0621, ω1 = 1.000, ω2 = 21.4208