Models | lnL | Compared | 2ΔLnL | P-value | Parameter estimates |
---|---|---|---|---|---|
Branch model | Â | Â | Â | Â | Â |
M0:one-ratio | −7258.8072 |  |  |  | ω = 0.1608 |
M1:free-ratio | −7211.2267 | M0 vs. M1 | 95.1610 | p < 0.05 |  |
Foreground branch: ancestral Colobinae | Â | Â | Â | ||
H1: ω0, ω1 | −7256.0276 | M0 vs. H1 | 5.5592 | p < 0.05 | ω0 = 0.1548, ω1 = 0.5583 |
H0: ω0, ω1 = 1 | −7256.4033 | H0 vs. H1 | 0.7514 | p > 0.05 | ω0 = 0.1543, ω1 = 1.0000 |
Foreground branch: ancestral Hylobates | |||||
H1: ω0, ω1 | −7256.8606 | M0 vs. H1 | 3.8932 | p < 0.05 | ω0 = 0.1570, ω1 = 0.5554 |
H0: ω0, ω1 = 1 | –7257.1816 | H0 vs. H1 | 0.6420 | p > 0.05 | ω0 = 0.1570, ω1 = 1.0000 |
Site model | Â | Â | Â | Â | Â |
M1a | –7149.5623 |  |  |  | p0 = 0.8609, p1 = 0.1391,ω0 = 0.0451, ω1 = 1.0000 |
M2a | –7145.1097 | M1a vs. M2a | 8.9052 | p < 0.05 | p0 = 0.8669, p1 = 0.1198, p2 = 0.0133, ω0 = 0.0499, ω1 = 1.0000, ω2 = 3.6223 |
M8a | –7149.3577 |  |  |  | p0 = 0.8725( p1 = 0.1275), p = 0.4874, q = 7.5964, ω = 1.0000 |
M8 | –7143.4448 | M8a vs. M8 | 11.8258 | p < 0.01 | p0 = 0.9744( p1 = 0.0257), p = 0.1750, q = 1.1154, ω = 2.8718 |
Branch-site model | Â | Â | Â | Â | |
Lineages of Cercopithecidae | Â | Â | Â | Â | |
Null | −7146.1093 |  |  |  | p0 = 0.8463, p1 = 0.0953, p2a = 0.0525 p2b = 0.0059,ω0 = 0.0407, ω1 = 1.0000 ω2 = 1.0000 |
Alternative | −7144.2553 |  | 3.7080 | p < 0.05 | p0 = 0.8683, p1 = 0.0924, p2a = 0.0354 p2b = 0.0038,ω0 = 0.0481, ω1 = 1.000 ω2 = 2.0345 |
Lineages of Colobinae | Â | Â | Â | Â | |
Null | –7145.5063 |  |  |  | p0 = 0.8299, p1 = 0.1176, p2a = 0.0460 p2b = 0.0065,ω0 = 0.0396, ω1 = 1.0000,ω2 = 1.0000 |
Alternative | –7143.7154 |  | 3.5818 | p < 0.05 | p0 = 0.8542, p1 = 0.1162, p2a = 0.0261 p2b = 0.0036,ω0 = 0.0428, ω1 = 1.0000 ω2 = 2.4997, |
Lineages of Cercopithecinae | Â | Â | Â | Â | |
Null | −7148.7133 |  |  |  | p0 = 0.8512, p1 = 0.1292, p2a = 0.0170 p2b = 0.0026,ω0 = 0.0440, ω1 = 1.0000,ω2 = 1.0000 |
Alternative | –7143.4285 |  | 10.5696 | p < 0.01 | p0 = 0.8639, p1 = 0.1228, p2a = 0.0116 p2b = 0.0017,ω0 = 0.0466, ω1 = 1.0000 ω2 = 5.8766 |
Lineages of Hylobatidae | Â | Â | Â | Â | |
Null | –7149.1766 |  |  |  | p0 = 0.8489, p1 = 0.1326, p2a = 0.0161 p2b = 0.0025,ω0 = 0.0442, ω1 = 1.000 ω2 = 1.0000 |
Alternative | –7143.6646 |  | 11.0240 | p0.01 | p0 = 0.8612, p1 = 0.1297, p2a = 0.0079, p2b = 0.0012,ω0 = 0.0462, ω1 = 1.000 ω2 = 11.8832 |