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Table 6 Individual searches for our transcriptome datasets (no background color) and the JGI genomes of a sponge (pink), a mollusk (violet), and an annelid (green)

From: Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

  Notch     
  Notch Delta Jagged/ Serrate Fringe HES SuH Deltex     
Petrosia ficiformis 578 247 680 346 234 510 157     
Crella elegans 472 247 247 307 85 300 147     
Amphimedon queenslandica 1667/614 539 1320 413/370/279 290 656 454     
Cephalotrix hogkongiensis 272/173/103 139 - 137 343/309/110 205 168/89     
Cerebratulus marginatus 286/495 101 131 140 358/109/167 271 233     
Chiton olivaceus 498 358 - 123 289/174/96 168 65     
Octopus vulgaris 916 217 - - 324/247 445 101     
Lottia gigantea 2404 724 1245 350 231 549 230     
Sipunculus nudus 451/232/241 - - - - - -     
Hormogaster samnitica 464/546/684/456 521/268/260/388/314/170 - 200/197 350/314/238/173/133/108 521/482 171/952     
Capitella teleta 2580/2612/2673/2985 785 1204 207 307/199/141 459/445 610     
Metasiro americanus 600 780 552 340 58/179/ 344 493 -     
Alipes grandidieri 196/203 151 115/416 66/82 80/294 273 415     
  TGF-β           
  TGF-β1 Activin Smad 1 Smad 2 Smad 3 dpp BMP1 BMP3 BMP5 BMP6  
Petrosia ficiformis 435 - 230 - 186 - 184 - - 102  
Crella elegans 90 - 408 98 190 - 150 - - 140  
Amphimedon queenslandica 371 - 408/412/181 - - - 1035 - - 413  
Cephalotrix hogkongiensis 251 118 151 - 307 - 208 - 114 -  
Cerebratulus marginatus 413 120 473 - 266 - 172 - 114 -  
Chiton olivaceus 109 285 77 - 242 181 110 - 152   
Octopus vulgaris - 500 302 - - 97 107 308 - 679  
Lottia gigantea 516 523/576 466 428 - 406 332 381 104 -  
Sipunculus nudus - 59 - - - - 153 - - -  
Hormogaster samnitica 446/317 192 472 - 417 104 226 96 - -  
Capitella teleta 511 471/429 309   452 339 1 239 - -  
Metasiro americanus 362/374 407/71 - 287 - 351 340/613 117 411 160  
Alipes grandidieri 425/507 - 117 - 94 173 113 480 - -  
  Hedgehog Housekeeping genes
  Hedgehog/ Hedgling Patched Smoothened/ Frizzled Ci/Gli TPI ATPB MAT PFK FBA EF-1α CAT
Petrosia ficiformis 1212 - 288/252/133 343 165 180 94 239 231 253 383/422
Crella elegans 327 - 165/156 517 218 267 377/162 139 172/128 460 374
Amphimedon queenslandica 1184 - 300/289/275 143 228 184 439/385 840 359 249 508/498
Cephalotrix hogkongiensis - - 199 - 141 264 - 698 - 191/79 152
Cerebratulus marginatus - - 100   248 393 100 705 38 331 255
Chiton olivaceus 303 - 465 105 235 499 247 421 121 - 190
Octopus vulgaris - 145 590/305/221 - 79 509 332 815 60 109 335
Lottia gigantea 355 527 879/572/489 1493 252 521 410 770 273 469 510
Sipunculus nudus 91 - - - 222 325 247 - 243/113 333 509
Hormogaster samnitica 386/301/127 555/536/107 838 695 150 178 402/106 585 213 230/133 458
Capitella teleta 329 1465 589/597/591 235 240 479 393 826 364 463 534
Metasiro americanus 236 670 75/577 597 236 210 261/182 766 213 207 101
Alipes grandidieri 285 132 66 681 235 289 107/78 525 202 124 431
  1. Length of protein sequences are given in amino acids. Abbreviations: JAG/SER, jagged and serrate; HES, hairy enhancer of split; Su(H), suppressor of hairless; Dx, deltex; TGF-β1, transforming growth factor β; ACV, activin; Smad, mothers against decapentaplegic; dpp, decapentaplegic; BMP, bone morphogenetic protein. Asterisks indicate the presence of hedgling instead of hedgehog; SMO/FZD, smoothened and frizzled; Ci/Gli, cubitus interruptus/GLI; TPI, triosephosphate isomerase; ATPB, ATP synthase subunit b vesicular; MAT, methionine adenosyl transferase; PFK, phosphofructokinase; FBA, fructose biphosphate aldolase; EF-1α, elongation factor-1α; CAT, catalase.