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Table 2 Assembly parameters

From: Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

  N reads BT N reads AT % reads discarded Avg.L AT NRMC N contigs N bases (Mb) Avg. L Contigs SD Maximum Contig Length (bp) N50 Avg. L SD
Petrosia ficiformis 49,758,556 32,612,454* 34.5 65.4 28,439,277 67,423 29.9 443.3 370.7 7,377 503 926.8 496.6
Crella elegans 26,513,534 25,951,906* 2.1 93.1 16,464,495 71,524 26.7 372.7 261.7 4,637 437 682.1 333.1
Cephalothrix hongkoiensis 51,091,244 26,631,980* 47.9 79.8 14,447,555 76,507 28.8 376.7 242.7 5,198 390 652.8 300.1
Cerebratulus marginatus 51,711,276 46,967,592* 9.2 73.8 22,977,409 109,947 57.1 518.0 394.2 7,731 559 991.0 521.6
Chiton olivaceus 46,265,184 40,889,060* 11.6 98.5 32,085,523 207,559 75.9 366.0 238.6 9,374 372 627.0 305.3
Octopus vulgaris 16,431,468 15,422,631* 6.1 125.0 11,670,780 77,383 41.7 540.0 125.0 16,472 599 1122.9 660.5
Sipunculus nudus 45,973,825 43,842,184** 4.6 100.5 25,679,520 71,960 31.2 431.7 228.0 3,032 437 676.2 262.5
Hormogaster samnitica 50,789,952 47,857,894** 5.8 96.5 32,511,666 190,189 75.9 399.8 312.5 7,319 423 766.6 426.8
Metasiro americanus 24,943,641 23,959,711** 3.9 129.6 19,735,275 101,929 43.9 439.5 423.0 10,407 477 1,010.3 621.7
Alipes grandidieri 32,294,430 31,561,359** 2.3 134.8 25,457,734 162,326 59.9 380.9 306.9 9,323 377 710.7 443.4
  1. Grey background indicates libraries sequenced for 150 bp; otherwise they are 100 bp. Abbreviations: N, number; BT, before thinning and trimming; AT, after thinning and trimming; NMRC, number of reads matched to contigs; Mb, megabases; bp, base pairs; avg., average; L, length; SD, standard deviation; *, thinning limit of 0.05; **, thinning limit of 0.005.