| | |
Log-likelihood
|
d
N
/d
S
|
P-value Chi-square
|
PSS
|
|---|
|
Actinopterygii
|
Log-likelihood M1a
|
-21118.741643
|
0.1331
|
1
|
-
|
| |
Log-likelihood M2a
|
-21118.741643
|
0.1331
| | |
|
Amphibia
|
Log-likelihood M1a
|
-22490.686927
|
0.1049
|
1
|
-
|
| |
Log-likelihood M2a
|
-22490.686928
|
0.1049
| |
33 T
|
|
Aves
|
Log-likelihood M1a
|
-16728.712033
|
0.1695
|
10-7*
|
76 W
|
| |
Log-likelihood M2a
|
-16714.234740
|
0.1807
| | |
|
Chondrichthyes
|
Log-likelihood M1a
|
-6993.815583
|
0.1783
|
1
|
-
|
| |
Log-likelihood M2a
|
-6993.815583
|
0.1783
| | |
|
Crocodylia
|
Log-likelihood M1a
|
-3538.892722
|
0.2144
|
1
|
-
|
| |
Log-likelihood M2a
|
-3538.892722
|
0.2144
| | |
|
Lepidosauria
|
Log-likelihood M1a
|
-38632.722264
|
0.2632
|
0.032*
|
159 H
|
| |
Log-likelihood M2a
|
-38629.286234
|
0.2665
| | |
|
Mammalia
|
Log-likelihood M1a
|
-10175.360951
|
0.0713
|
1
|
-
|
| |
Log-likelihood M2a
|
-10175.360951
|
0.0713
| | |
|
Testudines
|
Log-likelihood M1a
|
-10208.575616
|
0.1653
|
0.1145
|
23 V
|
| |
Log-likelihood M2a
|
-10206.408516
|
0.1730
| | |
- Test for positive selection using the M1a (neutral) and M2a (positive) models, and a maximum of 60 Rag1 sequences for each vertebrate lineage (see Methods for further explanations). "d
N
/d
S
" indicates the substitution rate ratio averaged across all sites and lineages. "PSS" indicates the positively selected sites (calculated as in [47]). We indicate the position of the amino acid under positive selection (based on the within group alignment used for this analysis) and the corresponding amino acid. * indicates the statistically significant p-values (<0.05) in the Chi-square test.
