Base composition, selection, and phylogenetic significance of indels in the recombination activating gene-1 in vertebrates

Table 2 Number of sequences present in our alignment for each part (5' and 3'-ends) of Rag1

		N	Bp	Complete fragment	1000 bp <N <complete fragment
Actinopterygii	3'	110	1453-3246	2	108
Amphibia	5'	7	1-1461	2	5
	3'	113	1462-3252	2	111
Aves	5'	119	1-1353	1	118
	3'	119	1354-3141	1	118
Chondrichthyes	3'	30	1360-3338	1	29
Crocodylia	5'	13	1-1257	2	11
	3'	13	1258-2947	1	12
Lepidosauria	5'	80	1-1263	68	12
	3'	84	1264-2928	24	60
Mammalia	5'	37	1-1377	6	31
	3'	89	1378-3165	6	83
Testudines	5'	24	1-1212	24	0
	3'	24	1213-2793	23	1

Number of sequences (N) included in our dataset for each part (5' and 3'-ends) of the analyzed fragment of Rag1. Different fragment lengths are indicated (based on the same alignment as in Table 1). "Bp" indicates the total number of base pairs or the base pairs range for the analyzed fragment after the within group alignment. "Complete fragment" indicates sequences included in the alignment for which the entire part of the gene as indicated under "Bp" was available. "1000 bp < N<complete fragment" indicates the number of sequences of more than 1000 base pairs, but not covering the full length of the fragment. Note that for Actinopterygii and Chondrichthyes only the 3'-end of the gene is indicated. 3' and 5' indicate the 3' and 5'-ends of the gene, respectively. See Methods for any additional information on the gene divisions and data available for each gene division.

ISSN: 1742-9994