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Table 1 Disagreement of the different partitions to each other for three sets of nodes.

From: Data congruence, paedomorphosis and salamanders

All Nodes
% Disagreement
Fig. 1
% Disagreement
Fig. 5A
% Disagreement
RAG1 ↔ rRNA 28.78 RAG1 ↔ rRNA 19.67 RAG1 ↔ rRNA 22.33
rRNA ↔ mtDNA 41.02 Mor ↔ rRNA 28.57 Mor ↔ rRNA 32.35
RAG1 ↔ mtDNA 43.30 Mor ↔ RAG1 29.37 Mor ↔ mtDNA 33.33
Mor ↔ rRNA 44.61 Mor ↔ mtDNA 36.07 RAG1 ↔ mtDNA 39.81
Mor ↔ RAG1 44.99 RAG1 ↔ mtDNA 37.80 rRNA ↔ mtDNA 41.58
Mor ↔ mtDNA 55.19 rRNA ↔ mtDNA 38.66 Mor ↔ RAG1 41.67
Mean Mean Mean
rRNA 38.14 RAG1 28.94 rRNA 32.09
RAG1 39.02 rRNA 28.97 RAG1 34.60
mtDNA 46.51 Mor 31.33 Mor 35.78
Mor 48.26 mtDNA 37.51 mtDNA 38.24
  1. % Disagreement indicates the percentage of the pairwise comparisons of partitions at which one of the partitions shows a negative value at the node and the approach used (PABA4, PABA3, PABA2, PBS, NDI, PABSA3, PABSA2, or LILD) while the other partition exhibits a positive value at the same node and the same method used. Mean shows the average disagreement each partition has to the other three partitions. Three sets of nodes were compared: 1st) all 50 nodes; 2nd) only the nodes of the analysis of all data (Fig. 1); 3rd) only the nodes of the analysis of the combined molecular data (Fig. 5A).