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Table 5 Molecular diagnostic characters of Pontohedyle brasilensis

From: How to describe a cryptic species? Practical challenges of molecular taxonomy

Marker

Diagnostic characters with position in alignment (in reference sequence)

Heterogeneous single pure positions

18S rRNA

164, T; 213 (225), G; 1693 (1706), T

-

28S rRNA

648 (654), A; 653 (659), T; 678, deletion, 679 (684), T; 683 (688), T; 704 (709), C; 801 (806), T

564 (570), T (in SI-CBC2010KJ01-B09 and ZSM 20090198: A); 793 (798) , C (in SI-CBC2010KJ02-E01: T, position 682)

16S rRNA

1, T; 11, deletion; 18 (17), A ; 80 (81), T; 102 (103), G; 107 (108), T; 131, G; 142, C; 172 (173), C; 182 (184), A; 210 (212), A; 214, deletion; 288 (306), G; 308 (325), C; 359 (376), C; 369 (386), G

-

COI

4, G; 16, C; 40, C; 44, G; 46, G; 68, G; 97, C; 101, C; 102, C; 167, G; 169, C; 170, T; 197, A; 202, G; 217, A; 227, G; 228, C; 239, T; 272, G; 287, A; 295, G; 310, C; 332, T; 351, deletion; 352, deletion; 353, deletion; 357 (354), A; 358( 355), G; 365 (362), T; 372 (369), T; 387 (384), C; 434 (431), G; 456 (453), G; 457 (454), G; 467 (464), G; 482 (479), T; 483 (480), G; 497(494), C; 499 (496), T; 512 (509), T; 518 (515), A; 529 (526), A; 535 (532), G; 542 (539), T; 543 (540), C; 566 (563), C; 619 (616), G; 635 (632), G

70, A (in ZSM Mol 20110722, G); 205, T (in ZSM Mol 20110722, C); 517, T (in ZSM Mol 20110722, C);

COI (AA)

4, I; 15, A; 23, V; 32, T; 34, P; 56, V; 57, L; 66, I; 76, A; 80, L; 91, A; 96, M; 111, L; 118, E; 119, deletion; 124 (123), F; 129 (128), A; 145 (144), V; 152 (151), W; 156 (155), A; 161 (160), W; 171 (170), L; 173 (172), I; 176 (175), L; 189 (188), L; 212 (211), V

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