Fig. 7

Maximum likelihood analysis of the complete data matrix, including 422,961 AAs from 2,014 OGs using partitioned analysis. Values on some nodes represent branch support (ML ultrafast bootstrap branch support of the partitioned analysis, ML ultrafast bootstrap support of the unpartitioned analysis with PMSF model, Bayesian posterior probabilities of the CAT-F81 + G4 analysis and Bayesian posterior probabilities of the of CAT-GTR + G4 analysis, respectively) values in black for the main data matrix and in red for the subsampled data matrix. Dashes indicate nodes not present. Bootstrap support and Bayesian posterior probabilities are only shown for nodes that are not maximally supported by all analyses. Coloured bars show the proportion of genes sampled for each taxon. The scale bar represents 1 substitutional change per 100 AAs